| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 962,300 – 962,401 |
| Length | 101 |
| Max. P | 0.658929 |
| Location | 962,300 – 962,401 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 91.06 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -20.62 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 962300 101 + 23771897 AUGGAUGAAAGUGCAAAACAGCAGCUGUUGAAUUCAUUAAAAACUCGGGAAACCUAUCUCGAUCUCUAAUGUGGUUAAGUUAGUCAGAAAGCGCAUUCAUA ....(((((.((((....((((....))))..(((...........((....))...((..(((.(....).)))..)).......))).)))).))))). ( -22.30) >DroSec_CAF1 4746 100 + 1 AUGGUUGAAUGUGCAAAACAGCUGUUGUUUAAUUCAUUAAAAUCUCGGGAAACCUAA-GAGAUCUCCAAUAUGGUUGAGUUAGUCAGAAAGCGCAUUCAUA .....(((((((((.......(((....((((((((.....(((((((....))...-)))))..((.....)).)))))))).)))...))))))))).. ( -27.40) >DroSim_CAF1 4823 100 + 1 AUGGUUGAAUGUGCAAAACAGCUGCUGUUUAAUUCAUUAAAACCUCGGGAAACCUAA-GAGAUCUCCAAUAUGGUUGAGUUAGUCAGAAAGCGCAUUCAUA .....(((((((((....(....)(((.((((((((.......(((((....))...-)))....((.....)).)))))))).)))...))))))))).. ( -26.00) >consensus AUGGUUGAAUGUGCAAAACAGCUGCUGUUUAAUUCAUUAAAAACUCGGGAAACCUAA_GAGAUCUCCAAUAUGGUUGAGUUAGUCAGAAAGCGCAUUCAUA .....(((((((((.((((((...))))))..(((...........((....))......((((........))))..........))).))))))))).. (-20.62 = -21.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:31 2006