Locus 3348

Sequence ID 3L_DroMel_CAF1
Location 9,817,710 – 9,817,830
Length 120
Max. P 0.992075
window5218

overview

Window 8

Location 9,817,710 – 9,817,830
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -38.47
Consensus MFE -36.90
Energy contribution -36.02
Covariance contribution -0.88
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.96
SVM decision value 2.31
SVM RNA-class probability 0.992075
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9817710 120 + 23771897
CACAUAAUCUUGCAGAUUGUGCAGAUUCGUGUCCACCGCAGAGCGAUCUUUAAUCUUGCUGGGAUCGAUCUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACCGGACGCAAUGU
..(((((((.....))))))).......((((((...(((((.((((.....)))((((((..(..((((......))))...)..)))))).).)))))(.......)))))))..... ( -33.90)
>DroSec_CAF1 111811 120 + 1
CACAUAGUCCUGCAGAUUGUGCAGAUUCGUGUCCACUGCAGAGCGAUCCUUAAUCUUGCUGGGAUCGAUCUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACGGGACGCAAUGU
.((((.((((((((((((((((.((.......(((.((.(((.(((((((..........))))))).)))))..))).......)).)).)))))))))(......))))))...)))) ( -39.54)
>DroSim_CAF1 115147 120 + 1
CACAUAAUCCUGCAGAUUGUGCAGAUUCGUGUCCACUGCGGAGCGAUCCUUAAUCUUGCUGGGAUCGAUCUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACGGGACGCAAUGU
.((((....(((((.....)))))....((((((..((((((.(((((((..........)))))))..................(((....))))))))).(.....))))))).)))) ( -36.20)
>DroEre_CAF1 114684 120 + 1
CACAUAGUCCUGCAGGUUGUGCAGAUUCGUGUCCACCGCAGAUCGAUCCUUAAUCUUGCUGGGAUCGAUCUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACGGGGCGCAAUGU
.((((.((((((....(((((((((.((((((.....(.(((((((((((..........)))))))))))))))))).......(((....)))))))).))))..))))))...)))) ( -43.80)
>DroYak_CAF1 124747 120 + 1
CACAUAGUCCUGCAGGUUGUGCAGAUUCGUGUCCACCGCAGAGCGAUCCUUAAUCUUGCUGGGAUCGAUUUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACGGGACGCAAUGU
.((((....(((((.....)))))....((((((..((((((.(((((((..........)))))))..................(((....))))))))).(.....))))))).)))) ( -38.90)
>consensus
CACAUAGUCCUGCAGAUUGUGCAGAUUCGUGUCCACCGCAGAGCGAUCCUUAAUCUUGCUGGGAUCGAUCUCACAUGGUUUCUUUUCGGCAACGAUCUGCGACAAAACGGGACGCAAUGU
.((((....(((((.....)))))....((((((..((((((.(((((((..........)))))))..................(((....)))))))))........)))))).)))) (-36.90 = -36.02 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:39 2006