Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,816,259 – 9,816,406 |
Length | 147 |
Max. P | 0.690583 |
Location | 9,816,259 – 9,816,366 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.43 |
Mean single sequence MFE | -39.62 |
Consensus MFE | -31.31 |
Energy contribution | -32.31 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.79 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9816259 107 + 23771897 GCCCGGAGGUGUGUGGGCUUUGGCUGCCUAUUUAUAGAUGUGGCGUGGAUCGCACGUUUCCGGCACACCACUGCUCUCGUGUGCAUUAUUCGUUGCAACA-------------CAUGCAA (((.(((..(((((((((....)))(((((((....)))).)))......))))))..)))))).......(((....(((((((........))).)))-------------)..))). ( -37.00) >DroSec_CAF1 110342 104 + 1 GCCCGGAGGUGUGUGGGCUUUGGCUGCCUAUUUAUAGAUGUGGCGUGUAUCGCACGUUUCCGGCACAC---UACUCUCGUGUGCAUUAUUCGUUGCAACA-------------CAUGCAA ...((((..(((((((((....)))(((((((....)))).)))......))))))..))))((((((---.......))))))........(((((...-------------..))))) ( -36.70) >DroSim_CAF1 113677 104 + 1 GCCCGGAGGUGUGUGGGCUUUGGCUGCCUAUUUAUAGAUGUGGCGUGGAUCGCACGUUUCCGGCACAC---UACUCUCGUGUGCAUUAUUCGUUGCAACA-------------CAUGCAA ...((((..(((((((((....)))(((((((....)))).)))......))))))..))))((((((---.......))))))........(((((...-------------..))))) ( -36.70) >DroEre_CAF1 113219 115 + 1 GCCCGGAGGUGUGUGGGCUUCGGCUGCCUAUUUAUAGAUGUGGCGUGGAUCGCACGUUUCCGGCACAC---UAC--UCGUGUGCAUUAUUCGUUGCAACACGUUGGAGCGGCACAUGCAA (((((((..(((((((((....)))(((((((....)))).)))......))))))..))))((((((---...--..)))))).......(((.(((....))).))))))........ ( -46.60) >DroYak_CAF1 123278 115 + 1 GCCCGAAGGUGUGUGGGCUUUAGCUGCCUAUUUAUAGUUGUGGCGUGGAUCGCACGUUUCCGGCACAC---UAC--UCGUGUGCAUUAUUUGUUGCAACACGCUGGAGCAGCACAUGCAA ........(((((((.((((((((.(((.............)))(((....(((((......((((((---...--..))))))......)).)))..)))))))))))..))))))).. ( -41.12) >consensus GCCCGGAGGUGUGUGGGCUUUGGCUGCCUAUUUAUAGAUGUGGCGUGGAUCGCACGUUUCCGGCACAC___UACUCUCGUGUGCAUUAUUCGUUGCAACA_____________CAUGCAA ...((((..(((((((((....)))(((((((....)))).)))......))))))..))))((((((..........))))))........(((((..................))))) (-31.31 = -32.31 + 1.00)
Location | 9,816,259 – 9,816,366 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.43 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -26.06 |
Energy contribution | -26.06 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9816259 107 - 23771897 UUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGCAGUGGUGUGCCGGAAACGUGCGAUCCACGCCACAUCUAUAAAUAGGCAGCCAAAGCCCACACACCUCCGGGC ((((.((-------------(((.(((........))))))))(((...(((((((((((....)).)).....))))))).)))........)))).....((((..........)))) ( -32.50) >DroSec_CAF1 110342 104 - 1 UUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGUA---GUGUGCCGGAAACGUGCGAUACACGCCACAUCUAUAAAUAGGCAGCCAAAGCCCACACACCUCCGGGC ..((.((-------------(((((((.........((((((.......---))))))((....))))))))))).(((.............))).))....((((..........)))) ( -33.42) >DroSim_CAF1 113677 104 - 1 UUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGUA---GUGUGCCGGAAACGUGCGAUCCACGCCACAUCUAUAAAUAGGCAGCCAAAGCCCACACACCUCCGGGC ..((.((-------------..(((((.........((((((.......---))))))((....)))))))..)).(((.............))).))....((((..........)))) ( -29.32) >DroEre_CAF1 113219 115 - 1 UUGCAUGUGCCGCUCCAACGUGUUGCAACGAAUAAUGCACACGA--GUA---GUGUGCCGGAAACGUGCGAUCCACGCCACAUCUAUAAAUAGGCAGCCGAAGCCCACACACCUCCGGGC ((((((((.(((......(((......)))......((((((..--...---)))))))))..)))))))).....(((.............))).......((((..........)))) ( -32.82) >DroYak_CAF1 123278 115 - 1 UUGCAUGUGCUGCUCCAGCGUGUUGCAACAAAUAAUGCACACGA--GUA---GUGUGCCGGAAACGUGCGAUCCACGCCACAACUAUAAAUAGGCAGCUAAAGCCCACACACCUUCGGGC ........(((((....((((((((((.........((((((..--...---))))))((....)))))))..))))).....(((....))))))))....((((..........)))) ( -38.30) >consensus UUGCAUG_____________UGUUGCAACGAAUAAUGCACACGAGAGUA___GUGUGCCGGAAACGUGCGAUCCACGCCACAUCUAUAAAUAGGCAGCCAAAGCCCACACACCUCCGGGC ..((.................((((((.........((((((..........))))))((....))))))))....(((.............))).))....((((..........)))) (-26.06 = -26.06 + 0.00)
Location | 9,816,299 – 9,816,406 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.16 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -24.22 |
Energy contribution | -24.60 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.03 |
Mean z-score | -1.43 |
Structure conservation index | 0.69 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9816299 107 - 23771897 UCAUUCGAUGUGCUUCGAUUUCAAUUGGUUCGGCUGUGAUUUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGCAGUGGUGUGCCGGAAACGUGCGAUCCACGCCA ...((((.(((((..((((....))))(((((..((..((.......-------------.))..)).)))))...))))))))).((.((((..(((((....)).)))..)))))).. ( -35.00) >DroSec_CAF1 110382 104 - 1 UCAUUCGAUGUGCUUCGAUUGCAAUUGGUUCGUCUGCGAUUUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGUA---GUGUGCCGGAAACGUGCGAUACACGCCA ...((((.(((((((((.(((((((..(((((....)))...))...-------------.)))))))))))....))))))))).((.---((((((((....)).)).)))))).... ( -33.20) >DroSim_CAF1 113717 104 - 1 UCAUUCGAUGUGCUUCGAUUGCAAUUGGUUCGUCUGCGAUUUGCAUG-------------UGUUGCAACGAAUAAUGCACACGAGAGUA---GUGUGCCGGAAACGUGCGAUCCACGCCA ......(.((((....(((((((....((((((.((((((.......-------------.))))))))))))...((((((.......---))))))((....))))))))))))).). ( -34.20) >DroEre_CAF1 113259 111 - 1 ----UCGAUGUGCUUCGAUUUCGAUUGGAUGGGCUGUGAUUUGCAUGUGCCGCUCCAACGUGUUGCAACGAAUAAUGCACACGA--GUA---GUGUGCCGGAAACGUGCGAUCCACGCCA ----((((......)))).............(((.(((..((((((((.(((......(((......)))......((((((..--...---)))))))))..))))))))..)))))). ( -37.70) >consensus UCAUUCGAUGUGCUUCGAUUGCAAUUGGUUCGGCUGCGAUUUGCAUG_____________UGUUGCAACGAAUAAUGCACACGAGAGUA___GUGUGCCGGAAACGUGCGAUCCACGCCA ...((((.(((((((((((((((..(.....)..))))))(((((..................)))))))))....))))))))).......((((((((....)).)))...))).... (-24.22 = -24.60 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:33 2006