| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,806,869 – 9,806,972 |
| Length | 103 |
| Max. P | 0.622406 |
| Location | 9,806,869 – 9,806,972 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.92 |
| Mean single sequence MFE | -26.29 |
| Consensus MFE | -14.41 |
| Energy contribution | -14.14 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9806869 103 + 23771897 ---AGCAGGACUACACACCCUUCUUUGCCAAGCACCAGUUGAACAAUGGCUAUCCCAGCUACAAGGUGCCUCCGGGCACCCAGCACAUUUUCGGCUAAGUUUGGGA---- ---((.(((.........))).))...((((((...(((((((.(((((((.....))).....((((((....)))))).....)))))))))))..))))))..---- ( -30.10) >DroVir_CAF1 110486 95 + 1 ---GACAGGACUACACUUCCUUCUUUGCCAAGCACCAACUGAACAACGGCUAUCCCAGCUACAAGGUGCCACCAGGCACCCAGCACAUGUUUGG------------AAUU ---((.((((.......))))))....(((((((....(((......((((.....))))....((((((....)))))))))....)))))))------------.... ( -27.60) >DroPse_CAF1 98414 103 + 1 ---GUCAGGACUACACAUCCUUCUUUGCCAAGCAUCAGCUGAACAACGCCUAUCCCAGCUACAAGGUGCCCCCAGGCACCCAACACAUGUUCGCCUAAGUCUGGAG---- ---.((.(((((..................(((....)))(((((..((........)).....((((((....)))))).......))))).....))))).)).---- ( -24.70) >DroWil_CAF1 128271 103 + 1 ---GACAGGACUAUACAAAUUUCUUUGCCCAACACCAACUGAACAAUGCUUAUCCUAGCUACAAAGUACCACCAGGUACUCAACAUAUGUUCGCUUAAGUUGGCGG---- ---.............................(.(((((((((((..(((......))).....((((((....)))))).......))))).....)))))).).---- ( -20.90) >DroAna_CAF1 108589 106 + 1 CCAAACAGGACUAUACUGGCUUCUUUGCCAAGCACCAGCUGAACAAUGCCUAUCCCACCUACAAGGUGCCUCCCGGCACCCAGCACAUGUUCGCCUAAGCUGGACA---- ((.....)).......((((......))))....(((((((((((.(((...............((((((....))))))..)))..))))).....))))))...---- ( -29.73) >DroPer_CAF1 99501 103 + 1 ---GUCAGGACUACACAUCCUUCUUUGCCAAGCAUCAGCUGAACAACGCCUAUCCCAGCUACAAGGUGCCCCCAGGCACCCAACACAUGUUCGCCUAAGUCUGGAG---- ---.((.(((((..................(((....)))(((((..((........)).....((((((....)))))).......))))).....))))).)).---- ( -24.70) >consensus ___GACAGGACUACACAUCCUUCUUUGCCAAGCACCAGCUGAACAACGCCUAUCCCAGCUACAAGGUGCCACCAGGCACCCAACACAUGUUCGCCUAAGUUUGGAG____ .......((((.........................(((((..............)))))....((((((....))))))........)))).................. (-14.41 = -14.14 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:07 2006