Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,806,736 – 9,806,841 |
Length | 105 |
Max. P | 0.558495 |
Location | 9,806,736 – 9,806,841 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.68 |
Mean single sequence MFE | -36.15 |
Consensus MFE | -27.20 |
Energy contribution | -27.37 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.09 |
Mean z-score | -1.05 |
Structure conservation index | 0.75 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9806736 105 - 23771897 AUAUGUAUCUUAAGCGGCUAUAUCCUACCCGGUUAACUCUCCUGGGACGGCAGACGGGACCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCGGCCU .............((((((........(((((.........)))))...((((((((((.(..(((((....))))).).))).)).))).)).))))))..... ( -36.10) >DroVir_CAF1 110262 100 - 1 -----UAUCUUUAAGGCGCCCUACAUACACGAUUGACUCUUCGGGGACGGCAAACGGGGCCCAACGCCAACAGGCGACGUUCCUCGUUUUCGCGUACAGCAGCCU -----........((((((..(((............(((....))).(((.((((((((..(..((((....))))..)..))))))))))).)))..)).)))) ( -34.30) >DroSim_CAF1 104483 105 - 1 AUGUGGAUCUUAAUCGGCUAUAUCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCGGCCU ....(((..((((((((.((.....)).))))))))...)))......(((.(((((((..(.(((((....))))).)..)))))))..((((...))))))). ( -38.20) >DroEre_CAF1 103238 105 - 1 AUAUUGAACUCGAGGGGACAUAGCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCUGCCU ........(((.((((((..(((((.....)))))..)))))))))..(((((.(((((..(.(((((....))))).)..))((((....)))).)))))))). ( -42.70) >DroWil_CAF1 127919 105 - 1 GUUUGAGUUUUACCAAGUUCUUACUCACCCGAUUGAUUCUUCUGGGACGGCAAACGGGGCCCAACGCCAAUUGGCGUCGUUCCUCAUUUUCACGAGCAGCAGCCU (((((.((((..((.(((....)))..(((((........)).)))..)).))))((((..(.(((((....))))).)..)))).......)))))........ ( -27.20) >DroYak_CAF1 113883 105 - 1 AUAUUUCUCUUGGAAGGAUAUAUCCUACCCGGUUGAUUCGCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCAGCUGCCU ...........((.((((....)))).))((((((.((((((((......)))((((((..(.(((((....))))).)..))))))....)))))))))))... ( -38.40) >consensus AUAUGUAUCUUAAAAGGAUAUAUCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCAGCAGCCU ...........................(((((........)).)))..(((.(((((((..(.(((((....))))).)..)))))))...((.....)).))). (-27.20 = -27.37 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:06 2006