| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,805,245 – 9,805,341 |
| Length | 96 |
| Max. P | 0.941331 |
| Location | 9,805,245 – 9,805,341 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 85.42 |
| Mean single sequence MFE | -38.18 |
| Consensus MFE | -32.49 |
| Energy contribution | -33.63 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9805245 96 - 23771897 UAGGCUCCAUUGCCGGCGGUGAAUUCACUGCGUGACUUAGGCUGCGGAGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCACUGCCUGCAGC ..(((......)))((((((((((....((.(((.....(((((.(((((((....))))))))))))..))).))....))))))))))...... ( -40.90) >DroSec_CAF1 99702 96 - 1 UAGGCUCCAUUGCCGGCGGUGAAUUCACUGCGUGACUUGGGCUGCGGAGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCACUGCCUGCAAC ..(((......)))((((((((((....((.(((.....(((((.(((((((....))))))))))))..))).))....))))))))))...... ( -42.00) >DroSim_CAF1 102720 96 - 1 UAGGCUCCAUUGCCGGCGGUGAAUUCACUGCGUGACUUGGGCUGCGGAGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCACUGCCUGCACC ..(((......)))((((((((((....((.(((.....(((((.(((((((....))))))))))))..))).))....))))))))))...... ( -42.00) >DroEre_CAF1 101611 96 - 1 UAGGCUCCUUGGCCGGCGGUGAAUUCACUGCGUGACUUGGGCUGCGGAGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCGCCGCCUGCAGC ..((((....))))((((((((((....((.(((.....(((((.(((((((....))))))))))))..))).))....))))))))))...... ( -43.70) >DroYak_CAF1 112004 96 - 1 UAGGCUCCUCCGCCGGCGGUGAAUUCACUGCGUUCCUUGGGCUGCGGCGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCGCUGCCUGCAGC ..(((......))).((((((....)))))).........((((((((((..(((((((...............)))))))...)).))).))))) ( -34.56) >DroPer_CAF1 97976 93 - 1 ---GCUCCUCCGGCCGGAGUGUAGUCAUGGUGCGACUUAGGCAACGGUGCACGAAUGGGCUUCCAGCCACCGCCCGUAUUGUCCAACGCCAUCAGG ---((((((((....)))).).)))..(((((((.....(....)((.(((...((((((...........))))))..)))))..)).))))).. ( -25.90) >consensus UAGGCUCCAUUGCCGGCGGUGAAUUCACUGCGUGACUUGGGCUGCGGAGCACCAAUGUGUUUCCAGCCACCACCCACAUUGUUCACUGCCUGCAGC ...........((.((((((((((....((.(((.....(((((.(((((((....))))))))))))..))).))....)))))))))).))... (-32.49 = -33.63 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:05 2006