| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,778,338 – 9,778,444 |
| Length | 106 |
| Max. P | 0.813176 |
| Location | 9,778,338 – 9,778,444 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.38 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -24.59 |
| Energy contribution | -24.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9778338 106 - 23771897 UUGGUUAAGUCGGGCAAUUCCUGGC--CGGGAAAGGCCAUUUCCUUUCGCGGGGCAUUUUCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGGUAGUUCAA ..((((.((((((((..(((((...--.)))))..)))..........((((((.....))))))))))).(((....)))............))))........... ( -33.50) >DroSec_CAF1 72951 106 - 1 UUGGAUAAGUCGGGCAAUUCCUGGC--CGGGAAAGGCCAUUCCCUUUCGCAGGGCAUUUGCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGGUAGUUCAA .(((((...(((((...(((..(((--(((((((((......))))))...((((....)))).)))))).(((....)))........)))...)))))..))))). ( -37.60) >DroSim_CAF1 75102 106 - 1 UUGGAUAAGUCGGGCAAUUCCUGGC--CGGGAAAGGCCAUUCCCUUUCGCAGGGCAUUUGCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGGUAGUCCAA .(((((...(((((...(((..(((--(((((((((......))))))...((((....)))).)))))).(((....)))........)))...)))))..))))). ( -40.50) >DroEre_CAF1 75279 106 - 1 UUGGCUAAGUCGGGCAAUUCCUGGC--CGGGAAAAGCCAUUUUCCUGCGCCGGGCAUUUGCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGGAUGUACAC ........(((((((((..((((((--((((((((....)))))))).))))))...))))))(((((....))).)))))........................... ( -41.70) >DroYak_CAF1 83945 108 - 1 UUGGCUAAGACGGGCAAUUCCUGACCCCGGGAAAGACCAUUUCCCAUCGCCGGGCAUUUGCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGAAAGAACAC ...(((..(((.(((.............((((((.....))))))..((.(((((....))))).))))).))).))).............................. ( -33.20) >DroPer_CAF1 73405 86 - 1 U------GUUUGGGCUAUUCCUGUG--CGGGAAAGGCCACCCCC----GUUGGGCAUUUGCCUGCCGGCUGG-----CGGUGAAAACCAAAACAGCGUG-UAGU---- (------((((.((((.(((((...--.))))).)))).((.((----(..((((....))))..)))..))-----.(((....))).))))).....-....---- ( -32.10) >consensus UUGGAUAAGUCGGGCAAUUCCUGGC__CGGGAAAGGCCAUUCCCUUUCGCAGGGCAUUUGCCCGCCGGCUGGUCGAGCGACAAAAAUAAGAAAAACCUGGUAGUACAA .......((((((((..((((((....))))))..)))..........((.((((....))))))))))).(((....)))........................... (-24.59 = -24.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:59 2006