Locus 3331

Sequence ID 3L_DroMel_CAF1
Location 9,775,916 – 9,776,024
Length 108
Max. P 0.534303
window5175

overview

Window 5

Location 9,775,916 – 9,776,024
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 84.98
Mean single sequence MFE -34.70
Consensus MFE -24.32
Energy contribution -25.88
Covariance contribution 1.56
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.70
SVM decision value 0.00
SVM RNA-class probability 0.534303
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9775916 108 - 23771897
UCCAUACUUAAACACCACUUCAUCACUCAUGGGCAUCGAGAUGAGG---UGUCAGGACAGGAGGAUCCUGCUACCUAGCCUACUCCUACUAAUCCUUAUGAUCGGCGGUGU
...........(((((.((..((((......((((((.......))---))))((((..((((((....(((....)))....)))).))..))))..)))).)).))))) ( -28.10)
>DroSec_CAF1 70529 108 - 1
UCCACACUCAAACACCACUCCAUCACUCAUGGGCAUCGAGAUGAGG---UGUCAGGGCAGGAGGAUCCUGCUACCCAGCCUGCUACUGCUAAUCCUCAUGAUCGGCGGUGU
...........(((((...((((.....))))((..(((.((((((---.(.(((((((((.((.........))...)))))).))))....))))))..)))))))))) ( -34.20)
>DroSim_CAF1 72659 108 - 1
UCCACACUCAAACACCACUCCAUCACUCAUGGGCAUCGAGAUGAGG---UGUCAGGGCAGGAGGAUCCUGCUACCCAGCCUGCUCCUGCUAAUCCUCAUGAUCGGCGGUGU
...........(((((...((((.....))))((..(((.((((((---......((((((((.(..(((.....)))..).))))))))...))))))..)))))))))) ( -38.60)
>DroEre_CAF1 72930 111 - 1
UCCAUACUCAAGCACCACUCCAUCACCCAUGGGAAUCGAGAUGAGGCGGCGCCAGGGCAGGAGGAUCCUGCUACCCAGCCUGCUCCUGCUCAUCCUCAUGAUCGGCGGCGU
......((((........(((((.....)))))........))))(((.((((.(((((((((.(..(((.....)))..).)))))))))(((.....))).)))).))) ( -38.09)
>DroYak_CAF1 81510 93 - 1
--CAUACUUAAACAC-------------AUUUGCAUCAAGAUGAGG---UGCCAGGGCAGGAGGAUCCUGCUGCCCAGCCUGCUACUGAUCAUCCUCAUGAUCGGCGGUGU
--............(-------------((((......)))))(((---(....((((((.((....)).)))))).))))((..((((((((....))))))))..)).. ( -34.50)
>consensus
UCCAUACUCAAACACCACUCCAUCACUCAUGGGCAUCGAGAUGAGG___UGUCAGGGCAGGAGGAUCCUGCUACCCAGCCUGCUCCUGCUAAUCCUCAUGAUCGGCGGUGU
...........(((((...((((.....))))...((((.((((((....((..(((((((.((.........))...)))))))..))....))))))..)))).))))) (-24.32 = -25.88 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:58 2006