Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 961,855 – 961,958 |
Length | 103 |
Max. P | 0.689698 |
Location | 961,855 – 961,958 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.62 |
Mean single sequence MFE | -22.31 |
Consensus MFE | -15.08 |
Energy contribution | -14.72 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.16 |
Mean z-score | -1.76 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 961855 103 + 23771897 GGAUUCGGUUUCGCCG------GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC-------GGCACAACAAUGUCCGUG-AAAUGCAAAACAAUAACAGUACUAACGAUAGCAUU-- ((((...(((..((((------((....))..((((((((......)))))))).)-------)))..)))...))))...-.(((((...((.......)).(....)...)))))-- ( -23.00) >DroPse_CAF1 6069 100 + 1 GUAA--CGUAACGUUC------GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC-------GGCAAAACAAUGUCCGUGCAAAUGCAAAACAAUAACAAUACUAACGACAGCA---- (.((--((...)))))------((((.(((..((((((((......))))))))..-------.)))......(((...(((....)))..)))................)))).---- ( -20.20) >DroWil_CAF1 6378 109 + 1 UGUU---GCUGCUCCU------GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUCCAGCUCUAGCACAACAAUGUCCGUG-AAAUGGAAAACAAUAACAAUAACAGCAACAGCAACAU ((((---((((....(------((((.(((..((((((((......))))))))((((..((....(((....)))....)-)..))))...........))).))))).)))))))). ( -30.50) >DroYak_CAF1 4682 109 + 1 AGAUUCGGUUUCGCUGCUGUACGCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC-------GGCACAACAAUGUCCGUG-AAAUGCAAAACAAUAACAGUACUAACGAUAGCAUU-- .......((((((.((((((.......(((((((((((((......)))))))).(-------((.(((....))))))..-..)))))........))))))....))).)))...-- ( -21.06) >DroAna_CAF1 4722 100 + 1 UGUUUCGGUUUCGUUC------GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC-------GGCAUAACAAUGUCCGUG-AAAUGCAAAACAAUAACAGAACUAACGAUAGC----- ((((...((((.((((------((........((((((((......))))))))..-------(((((....))))).)))-)...)).))))...))))..............----- ( -18.90) >DroPer_CAF1 5407 102 + 1 GUAA--CGUAACGUUC------GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC-------GGCAAAACAAUGUCCGUGCAAAUGCAAAACAAUAACAAUACUAACGACAGCAGC-- (.((--((...)))))------((((.(((..((((((((......))))))))..-------.)))......(((...(((....)))..)))................))))...-- ( -20.20) >consensus GGAU__GGUUUCGCUC______GCUGAUGUAUGCAUAAAAUAAUCCUUUUAUGCUC_______GGCACAACAAUGUCCGUG_AAAUGCAAAACAAUAACAAUACUAACGACAGCA____ ......................((((.(((..((((((((......)))))))).........((((......)))).............................))).))))..... (-15.08 = -14.72 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006