Locus 3329

Sequence ID 3L_DroMel_CAF1
Location 9,760,159 – 9,760,265
Length 106
Max. P 0.536492
window5172

overview

Window 2

Location 9,760,159 – 9,760,265
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -9.28
Consensus MFE -7.69
Energy contribution -8.00
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.83
SVM decision value 0.01
SVM RNA-class probability 0.536492
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9760159 106 + 23771897
CUUGUAGUCAGGAUAUUGAAAAACAACAAAAAAAAAAAAACACAAAAAACCAACACAAACACAUUGUACUUAUACAUGACUAUGUUAUAUACACCCGCAUAUACUA
...(((((((..((((((........))).........................((((.....))))...)))...)))))))....................... (  -8.00)
>DroSim_CAF1 56832 103 + 1
CUUGUAGUCAGGUUAUUGAAAAACAACAAAAA---AAAAACACAAAAAACCAACACAAACACAUUGUACUUAUACAUGACUAUGUUAUAUACACCCACAUAUACUA
...(((((((((((.((...............---.........)).))))...((((.....)))).........)))))))....................... (  -9.76)
>DroEre_CAF1 55273 106 + 1
CUUGUAGUCAGGUUAUUGAAAAACAAAAAACAAAAAAAAACACAAGAAACCAACACAAACACAUUGUACUUAUACAUGACUAUGUUAUAUACACCCGCAUAUACUA
...(((((((((((.(((........................)))..))))...((((.....)))).........)))))))....................... ( -10.76)
>DroYak_CAF1 65495 97 + 1
CUUGUAGUCAGGUUAUUGAAAAACUAA---------AAAACACAAAAAUCCAACACAAACACAUUGUACUUAUACAUGACUAUGUUAUAUACACCCGCAUAUACUA
...(((((((((((.......))))..---------..................((((.....)))).........)))))))....................... (  -8.60)
>consensus
CUUGUAGUCAGGUUAUUGAAAAACAAAAAAAA___AAAAACACAAAAAACCAACACAAACACAUUGUACUUAUACAUGACUAUGUUAUAUACACCCGCAUAUACUA
...(((((((((((.((...........................)).))))...((((.....)))).........)))))))....................... ( -7.69 =  -8.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:55 2006