Locus 3328

Sequence ID 3L_DroMel_CAF1
Location 9,757,989 – 9,758,088
Length 99
Max. P 0.812032
window5171

overview

Window 1

Location 9,757,989 – 9,758,088
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -33.32
Consensus MFE -19.58
Energy contribution -19.08
Covariance contribution -0.49
Combinations/Pair 1.53
Mean z-score -1.82
Structure conservation index 0.59
SVM decision value 0.65
SVM RNA-class probability 0.812032
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9757989 99 - 23771897
AGGAUGGUGCAGAAUAAAGCGGUGUUCGGCUGAUUCUUGGGCAAUGGUGGUGGACCAAUGGGCAUGGCUGUUGUUGAAAUGUUCAUUACCAUCUGCGUA
.((((((((..(((((.(((.(....).))).....((.(((((((((.(((..((...)).))).))))))))).)).)))))..))))))))..... ( -31.50)
>DroPse_CAF1 53704 91 - 1
AGGAUGGUGCAGAAGAGGGCGGUGUUCGGUUGAUUAGUGGGCAGCUUCGAGGUGCCCACUGGCGACGCCGUGGUCGUCGCGUUCAGCAGA------G--
.(((((.(((........))).))))).(((((.(((((((((.(.....).)))))))))(((((((....).))))))..)))))...------.-- ( -40.30)
>DroSec_CAF1 52651 99 - 1
AGGAUGGUGCAGAAUAAAGCGGUGUUCGGCUGAUUCUUGGGCAAUGGUGGUGGACCAAUGGGCAUGGCUGUUGUAGAGAUGUUCAUUACCAUCUGCGUA
.((((((((..(((((.(((.(....).)))...((((..((((((((.(((..((...)).))).)))))))).)))))))))..))))))))..... ( -33.50)
>DroSim_CAF1 54668 99 - 1
AGGAUGGUGCAGAAUAAAGCAGUGUUCGGCUGAUUCUUGGGCAAUGGUGGUGGACCAAUGGGCAUGGCUGUCGUCGAGAUGUUCAUUACCAUCUGCGUA
.((((((((..((((..(((.((((((((((.(....).)))..((((.....)))).))))))).)))(((.....)))))))..))))))))..... ( -30.40)
>DroEre_CAF1 53120 99 - 1
AAGAUGGUGCAGAAUAAAGCGGUAUUCGGCUGAUUUUUGGGCAAUGGUGGUGGACCCAUUGGCAUGGCCGUCGUAGAGAUGUUCAUUACCAUCUGCGUA
.(((((((((((((...(((.(....).)))...)))))(.((((((.(.....))))))).)(((..((((.....))))..)))))))))))..... ( -33.50)
>DroAna_CAF1 50650 97 - 1
AGGAUGGUGCAGAAGAGAGCGGUAUUGGGUUGGUUCUUGGGCAGGGCAGGAGGACCCAUGGGCAUGGACGUUGUGGUGGCGUUCAGGACACUCUCAG--
..............(((((.(((..((((((..((((((.......))))))))))))...)).((((((((.....))))))))...).)))))..-- ( -30.70)
>consensus
AGGAUGGUGCAGAAUAAAGCGGUGUUCGGCUGAUUCUUGGGCAAUGGUGGUGGACCAAUGGGCAUGGCCGUUGUAGAGAUGUUCAUUACCAUCUGCGUA
.(((((.(((........))).))))).(((.(....).))).((((((((((((.....(((...)))(((.....)))))))))))))))....... (-19.58 = -19.08 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:54 2006