Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,754,887 – 9,754,993 |
Length | 106 |
Max. P | 0.622790 |
Location | 9,754,887 – 9,754,993 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.63 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -25.19 |
Energy contribution | -24.88 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.17 |
Mean z-score | -1.11 |
Structure conservation index | 0.78 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9754887 106 + 23771897 CGGGCGUUGUCCUGCUCGAUCUUAACGAGAAGGACCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUUAGUUAUCUUUUUACCAAAUAUAUUCAGUUUUAAGU ((((((..(((((.((((.......)))).))))).)))))).(((((....)))))((((((((.((((.....))))))))))))................... ( -32.70) >DroPse_CAF1 50005 93 + 1 CGGGCGUUGUGCUGCUGGACCUCAACGAGAAGGAUCUGCCCGCAGUGGCCUAUCGUGUGGUAGAGCAGGUGAGUCCUGACUCUGCC-------------UUUAAAU .((((......(((((..(((...((((..(((..(((....)))...))).))))..)))..)))))..((((....)))).)))-------------)...... ( -34.10) >DroSec_CAF1 49597 106 + 1 CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUGAGUUAUCUCUUUACCAAAUAUAUUCAGAUUUAAGU ((((((..(((((.((((.......)))).))))).)))))).(((((....)))))(((((((..(((((...))))).)))))))................... ( -29.10) >DroSim_CAF1 51584 106 + 1 CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUGGAACAGGUGAGUUAUAUUUUUACCAAAUAUAUUCAGAUAUAUAU ((((((..(((((.((((.......)))).))))).))))))...((..(((((....)))))..))((((((.......))))))..((((((....)))))).. ( -30.20) >DroYak_CAF1 60293 106 + 1 CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGACCUGCCUGCCGUGGCCUACCGCGUGGUAGAACAGGUGAGUUACUUUUUAACUCAUUACAUUCAGAUUUAAGU ((((((..(((((.((((.......)))).))))).))))))...((..(((((....)))))..))(((((((((.....)))))))))................ ( -35.80) >DroAna_CAF1 47501 93 + 1 CGGGCGUUGUCCUGCUCGACCUCAACGAGAAGGAUCUGCCCGCCGUGGCCUAUCGUGUGGUGGAGCAGGUAUGGUAGAUUAU-------------CGUUUUCAAGA ((((((......)))))).....(((((....((((((((.(((...(((((((....))))).)).)))..)))))))).)-------------))))....... ( -32.50) >consensus CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUGAGUUAUAUUUUUACCAAAUAUAUUCAGAUUUAAGU .(((((..(((((.((((.......)))).))))).)))))(((.((..(((((....)))))..))))).................................... (-25.19 = -24.88 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006