| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,741,343 – 9,741,433 |
| Length | 90 |
| Max. P | 0.987787 |
| Location | 9,741,343 – 9,741,433 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.79 |
| Mean single sequence MFE | -15.67 |
| Consensus MFE | -12.15 |
| Energy contribution | -13.78 |
| Covariance contribution | 1.63 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.78 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9741343 90 - 23771897 AGUACACA--A-AGCAUUUACGUGCCUAUUACCAUAAAAAUGGUACAAAAAAAAUGUAAUUAGCCCUAAUUAAUUGAAUAAAGGCAGUACAAU .((((...--.-.((......))((((..((((((....))))))...........((((((....)))))).........)))).))))... ( -17.10) >DroSec_CAF1 36423 90 - 1 AGUACACA--AAAGCAUUUACGUGCCUAUUGCCAUAAAAAUGGUACAAAA-AAAUUUAAUUAGUACUAAUUAAUUGAAUAAAGCCACCACAAU ........--...((......(((((.(((........))))))))....-..(((((((((((....)))))))))))...))......... ( -14.70) >DroSim_CAF1 38291 90 - 1 AGUACACA--AAAGCGUUUACGUGCCUAUUGCCAUAAAAAUGGUACAAAA-AAAUUUAAUUAGUACUAAUUAAUUGAAUAAAGCCACCACAAU .(((.((.--.....)).)))(((.((..((((((....)))))).....-..(((((((((((....)))))))))))..)).)))...... ( -16.00) >DroEre_CAF1 36690 91 - 1 ACUACAUCCACUAGCAUUUACAUGGCUAUUACCAUAAAAAUGGUACAAC--CCAUUGAAUUAGCCUUAAUUAAUUGAAUAAAGCCAGCACAAU ......................(((((..((((((....))))))....--..(((.((((((......)))))).)))..)))))....... ( -14.90) >consensus AGUACACA__AAAGCAUUUACGUGCCUAUUACCAUAAAAAUGGUACAAAA_AAAUUUAAUUAGCACUAAUUAAUUGAAUAAAGCCACCACAAU .....................((((((..((((((....))))))........(((((((((((....)))))))))))..))))))...... (-12.15 = -13.78 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:50 2006