Locus 3324

Sequence ID 3L_DroMel_CAF1
Location 9,737,464 – 9,737,568
Length 104
Max. P 0.982634
window5166

overview

Window 6

Location 9,737,464 – 9,737,568
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 94.90
Mean single sequence MFE -31.08
Consensus MFE -25.80
Energy contribution -27.00
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.83
SVM decision value 1.92
SVM RNA-class probability 0.982634
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9737464 104 + 23771897
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCUGCUGCUCGGACGGAAACGCAGAAACUGCGGAUAAAAGGCGGACAAUAUUU
.(((.....(((.(.(((((((((((.((((....))))))))(....)...)))))))..).)))....(((((...)))))...........)))....... ( -31.10)
>DroSec_CAF1 32675 96 + 1
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCUGCUGCUCGCA--------CAGAAACUGCGGAUAAAAGGCGCAUAAUAUUU
..........((((((((((((((((.((((....))))))))(....)...)))))))(((((--------.......)))))......)))))......... ( -30.70)
>DroSim_CAF1 33559 104 + 1
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCUGCUGCUCGCACGGAAACACAGAAACUGCGGAUAAAAGGCGCAUAAUAUUU
((((......((((.(((((((((((.((((....))))))))(....)...)))))))..))))(....).....))))(((.........)))......... ( -31.70)
>DroEre_CAF1 32787 104 + 1
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCCGCUGCUCGCACGGAAACACAGAAACUGCGGAUAAAAGGCGGAUAAUAUUU
.((((....(((((.((((((.((((.((((....))))))))(....).)))))).....)))))............((((.........)))).)))).... ( -29.70)
>DroYak_CAF1 41966 104 + 1
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCUGCUGCUCGCACGGAAACACAGAAACUGCGGAUAAAAGGCGGAUAAUAUUU
.((((....(((((.(((((((((((.((((....))))))))(....)...)))))))..)))))............((((.........)))).)))).... ( -32.20)
>consensus
GGUUAAAAACGUGCUGCGGCAGGAACUGUAAAUCAUUACGUUCGGAAACGUGCUGCUGCUCGCACGGAAACACAGAAACUGCGGAUAAAAGGCGGAUAAUAUUU
.........(((((.(((((((((((.((((....))))))))(....)...)))))))..)))))............((((.........))))......... (-25.80 = -27.00 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006