Locus 3323

Sequence ID 3L_DroMel_CAF1
Location 9,731,069 – 9,731,159
Length 90
Max. P 0.997413
window5165

overview

Window 5

Location 9,731,069 – 9,731,159
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 98.15
Mean single sequence MFE -18.63
Consensus MFE -18.65
Energy contribution -18.98
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 1.00
SVM decision value 2.85
SVM RNA-class probability 0.997413
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9731069 90 - 23771897
CCAUACAUUUUUCCGCUGAAGGCU-UUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACAAU
..............(((((.((((-((((....)))).))))(((((....)))))....................))))).......... ( -18.90)
>DroSec_CAF1 26058 91 - 1
CCAUACAUUUUUCCGCUGAAGGCUUUUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACAAU
..............(((((.((((.((((....)))).))))(((((....)))))....................))))).......... ( -20.10)
>DroSim_CAF1 26623 90 - 1
CCAUACAUUUUUCCGCUGAAGGCU-UUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACAAU
..............(((((.((((-((((....)))).))))(((((....)))))....................))))).......... ( -18.90)
>DroEre_CAF1 25374 90 - 1
CCAUACAUUUUUCCGCUGAAGGCU-UUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACUAU
..............(((((.((((-((((....)))).))))(((((....)))))....................))))).......... ( -18.90)
>DroYak_CAF1 35331 90 - 1
CCAUACAUUUUUCCGCUGAAGGCU-UUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCGUAUAGAUCAGUUUUUAACAAU
..............(((((.((((-((((....)))).))))(((((....)))))....................))))).......... ( -18.90)
>DroAna_CAF1 23996 90 - 1
CCAUACAUUUUUCCGCUGAAGGCU-CUGAGCCAUCGACAGCCACAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACAAU
..............(((((.((((-.((.((........)))).)))).....((((.........))))......))))).......... ( -16.10)
>consensus
CCAUACAUUUUUCCGCUGAAGGCU_UUGAGCCAUCGACAGCCGCAGCCAAAGUUGCUCAAUAACCAAGCAUAUAGAUCAGUUUUUAACAAU
..............(((((.((((.((((....)))).))))(((((....)))))....................))))).......... (-18.65 = -18.98 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:48 2006