Locus 3320

Sequence ID 3L_DroMel_CAF1
Location 9,727,697 – 9,727,791
Length 94
Max. P 0.723949
window5162

overview

Window 2

Location 9,727,697 – 9,727,791
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 84.18
Mean single sequence MFE -21.28
Consensus MFE -17.02
Energy contribution -18.42
Covariance contribution 1.39
Combinations/Pair 1.18
Mean z-score -1.95
Structure conservation index 0.80
SVM decision value 0.41
SVM RNA-class probability 0.723949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9727697 94 - 23771897
UCAGACAAGCUCACAGCAUAUCAAUAUGCCGUGCGGGGAGAUUCUUAUGACCAACCCACUCAUUUGAAUCUUCUCAUGAACUCAUUUCUACGUG
(((........(((.(((((....))))).))).((((((((((..((((.........))))..)))))))))).)))............... ( -24.20)
>DroSec_CAF1 22858 94 - 1
CCAGACAAGCUCACAGCAUAUCAAUAUGCCGUGCGGGGAGAUUCUUAUGACCAACCUACUCAUUUGAAUCUUCUCAUGAACUCAUUUCUAUGUG
....(((....(((.(((((....))))).))).((((((((((..((((.........))))..))))))))))...............))). ( -24.30)
>DroSim_CAF1 23377 94 - 1
CCAGACAAGCUCACAGCAUAUCAAUAUGCCGUGCGGGGAGAUUCUUAUGACCAACCUACUCAUUUGAAUCUUCUCAUGAACUCAUUUCUACGUG
..(((......(((.(((((....))))).))).((((((((((..((((.........))))..))))))))))...........)))..... ( -24.00)
>DroEre_CAF1 22128 94 - 1
UCAGACAAGCUCACAGCAUAUCAAUAUGCCGUGCGGGGAGGAUCUUAUGACCCAGCUACUCAUUUGAAUCUUCCCAUGAACUCAUUCCGAGGUG
(((......(.(((.(((((....))))).))).)(((((((((..((((.........))))..).)))))))).))).(((.....)))... ( -25.60)
>DroYak_CAF1 31917 94 - 1
UCAGACAAGCUCACAGCAUAUCAAUAUGCCUUGCGGGGCGAAUCUUAUGACCCACCCACUCAUUUGAAUCUUCUCAUGAACUCAUUGCUACGUG
...........(((.(((((....)))))...((((((.(..((....))..).)))..((((..((....))..))))......)))...))) ( -15.10)
>DroAna_CAF1 20965 86 - 1
CUAACCGACCUCCCACCAUAUCGAUAUGCUGGUCG-----GAUCUUAUGUCCAAGCUACUCAUUUGAUUCUUCCAAUGAAUUCCACUCUAA---
....((((((......((((....))))..)))))-----)..................(((((.((....)).)))))............--- ( -14.50)
>consensus
CCAGACAAGCUCACAGCAUAUCAAUAUGCCGUGCGGGGAGAAUCUUAUGACCAACCUACUCAUUUGAAUCUUCUCAUGAACUCAUUUCUACGUG
...........(((.(((((....))))).))).((((((((((..((((.........))))..))))))))))................... (-17.02 = -18.42 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:45 2006