| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,724,041 – 9,724,137 |
| Length | 96 |
| Max. P | 0.591618 |
| Location | 9,724,041 – 9,724,137 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.96 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.02 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9724041 96 + 23771897 UUUUGUCGCCGCCUUCCAGGAGUUUCUUGAACUUCUUGGGCGUCCCAUUGAGCUUUUUGCGGAAACCAAAGGACAUGGCGGUGCCUUUGGUGUGCA ......((((((((...((((((((...)))))))).))))((((..(((.((.....))(....)))).))))..))))(..((....).)..). ( -31.90) >DroVir_CAF1 20449 95 + 1 CA-CCCCGCUGCCCUCAAGCAGUUUCUUGAACUUUUUGGGCGUACCAUUGAGCUUCUUGCGAAAGCCAAAGGACAUGGCAGUGCCUUUGGUGUGUG ((-((.(((((((((((((.(((((...))))).)))))).((.((.(((.(((((....).))))))).))))..))))))).....)))).... ( -30.00) >DroPse_CAF1 17435 96 + 1 AGGUAGAGUGGGAUUCCAGGAGUUUCUUGAACUUCUUGGGCGUACCAUUGAGCUUCUUGCGAAAGCCGAAGGACAUGGCUGUACCUUUGGUAUGCA ((((..(((((...(((((((((((...)))).)))))))....)))))..))))..((((...(((((((((((....))).)))))))).)))) ( -31.20) >DroGri_CAF1 23643 92 + 1 ----CUUGCCGCCUUCCAGCAGUUUCUUGAACUUUUUGGGCGUACCGUUGAGCUUCUUGCGAAAGCCAAAGGACAUCGCUGUGCCUUUGGUAUGGA ----.....(((((......(((((...)))))....)))))..((((...((.....))....(((((((((((....))).)))))))))))). ( -26.00) >DroWil_CAF1 20450 95 + 1 AUCUAUUGUCU-UGUCGAGCAGUUUUUUGAACUUUUUGGGAGUACCAUUGAGUUUUUUACGAAAACCAAAGGACAUUGCCGUCCCUUUGGUAUGCA ...........-......(((((.....((((((..(((.....)))..))))))...))....((((((((((......)).)))))))).))). ( -25.60) >DroPer_CAF1 17392 96 + 1 AGGUAGUGUGGGAUUCCAGGAGUUUCUUGAACUUCUUGGGCGUACCAUUGAGCUUCUUGCGAAAGCCGAAGGACAUGGCUGUGCCUUUGGUAUGCA ...............((((((((((...)))).))))))((((((((.....((((..((....)).)))).....(((...)))..)))))))). ( -30.80) >consensus AG_UAUUGCCGCCUUCCAGCAGUUUCUUGAACUUCUUGGGCGUACCAUUGAGCUUCUUGCGAAAGCCAAAGGACAUGGCUGUGCCUUUGGUAUGCA ......................((((..((((((..(((.....)))..))).)))....))))((((((((((......)).))))))))..... (-21.10 = -20.02 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:44 2006