| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,720,894 – 9,720,991 |
| Length | 97 |
| Max. P | 0.615631 |
| Location | 9,720,894 – 9,720,991 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.36 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -18.11 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9720894 97 - 23771897 GCAUUUUAAAAUGUUCGAAGUGAUCCAUUUCCAGAAAU--------AAGGUCGAGAGUUCAUACUAUAUAGUAUGUAUUUCAGAUGACCUCUUGUAACUCGGCAU ((..............((((((...)))))).......--------.(((((((((...((((((....))))))..))))....)))))...........)).. ( -18.10) >DroSec_CAF1 16164 105 - 1 GCAUCUUAAAAUGUUCGAAGUGAACCAUUUCGAGAAAUGGGUCAAAAAGGUCGAGAGUUUAUACCAUAUAAUAUAUAUUUCAAAUGACCUCUCGUAACUCAGUAU ...(((..((((((((.....))).)))))..)))..(((((.....(((((((((...((((........))))..))))....)))))......))))).... ( -18.80) >DroSim_CAF1 16682 97 - 1 GCAGCAUAAAAUGUUCGAAGUGAUCCAUUUCGAGAAAU--------AAGGUCGAGAGUUCAUAUCAUAUAAUAUGUAUGUCAGAUGAACUCUCGUAACUCAGUAU ...((........(((((((((...)))))))))....--------.((..(((((((((((..(((((.....)))))....)))))))))))...))..)).. ( -28.40) >consensus GCAUCUUAAAAUGUUCGAAGUGAUCCAUUUCGAGAAAU________AAGGUCGAGAGUUCAUACCAUAUAAUAUGUAUUUCAGAUGACCUCUCGUAACUCAGUAU ((...........(((((((((...))))))))).............((..((((((.((((...((((.....)))).....)))).))))))...))..)).. (-18.11 = -17.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:40 2006