Locus 3315

Sequence ID 3L_DroMel_CAF1
Location 9,718,385 – 9,718,483
Length 98
Max. P 0.999187
window5153

overview

Window 3

Location 9,718,385 – 9,718,483
Length 98
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 75.90
Mean single sequence MFE -33.64
Consensus MFE -16.06
Energy contribution -18.26
Covariance contribution 2.20
Combinations/Pair 1.14
Mean z-score -3.00
Structure conservation index 0.48
SVM decision value 3.42
SVM RNA-class probability 0.999187
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9718385 98 - 23771897
CGGCGAUGCUGCUGAUGUUGCUAGUUGAUAUU-GCUGGUGCCGUUGUUGCUGGCGGGAACGGUG-GAAAACGGAACAUUGGUAACAACAGCAACCA-AUUA
(((((....)))))..((((((.((((...((-((..((((((((....(((.((....)).))-)..)))))..)))..))))))))))))))..-.... ( -35.00)
>DroSec_CAF1 13551 99 - 1
CGGCGAUGUUGCUAAUAUUGCUAGUUGAUGUU-GCUGGUGCUGUUGUUGCUGGCGGAAACGGUGGGAAAACGGAACAUUGGUAACAACAGCUAACA-AUUA
.((((((((.....))))))))(((((.((((-((..((((((((.((.(((.((....)).))).)))))))..)))..)))))).)))))....-.... ( -37.00)
>DroSim_CAF1 14088 90 - 1
CGGCGAUGUUG---------CUAGUUGAUGUU-GCUGGUGCUGUUGUUGCUGGCGGGAACGGUGGGAAAAUGGAACAUUGGUAACAACAGCAAACA-AUUA
((((((((((.---------......))))))-)))).((((((((((((..(((....))((...........)).)..))))))))))))....-.... ( -31.60)
>DroYak_CAF1 21885 99 - 1
CGGCGAUGUUGCUGGUGUUGCCUGCUGAUGUU-GCUGGUGCUGUUGUUGCUGGCGGGAACGGUGGGAAAACGGAACAUUGGUAACAACAGCAACCA-AUUA
.(((((((((((.((.....)).)).))))))-)))((((((((((((((..(((....))((......))......)..))))))))))).))).-.... ( -39.20)
>DroPer_CAF1 12171 80 - 1
-------------ACUGUUG------GCUGUUGGCUGUUGC--CUGUUGGCUGGUGGAACGUGGUGGCAACGAAACAUUGGUAACAACAGCAACCAAAGCA
-------------.......------(((.((((.(((((.--.(((((.(..(((...(((.......)))...)))..)))))).))))).))))))). ( -25.40)
>consensus
CGGCGAUGUUGCUAAUGUUGCUAGUUGAUGUU_GCUGGUGCUGUUGUUGCUGGCGGGAACGGUGGGAAAACGGAACAUUGGUAACAACAGCAACCA_AUUA
...................((((((........))))))(((((((((((..(.(....((.........))...).)..))))))))))).......... (-16.06 = -18.26 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:37 2006