Locus 3314

Sequence ID 3L_DroMel_CAF1
Location 9,712,937 – 9,713,038
Length 101
Max. P 0.634673
window5152

overview

Window 2

Location 9,712,937 – 9,713,038
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.30
Mean single sequence MFE -41.62
Consensus MFE -34.44
Energy contribution -36.24
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.83
SVM decision value 0.21
SVM RNA-class probability 0.634673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9712937 101 - 23771897
UGGCGGAGCAGGAGCGGGUGGUGGAGGUGGAGGUGGUGGAGCCACUGCGUCCGGUACAUCCACCCAGAGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((.(((......((((((((..(.((((.(..(((....)))..).)))).).)).))))))....((((((.......)))))).)))))))..... ( -47.30)
>DroSec_CAF1 8024 95 - 1
UGGCGGAGCAGGA------GGUGGAGGUGGAGGUGGUGGAGCCACUGCGUCCGGUACAUCCACCCAGAGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((.(((..(.------(((((((.((((.(..(((....)))..).)))).)...)))))))....((((((.......)))))).)))))))..... ( -42.70)
>DroSim_CAF1 7262 95 - 1
UGGCGGAGCAGGA------GGUGGAGGUGGAGGUGGUGGAGCCACUGCGUCCGGUACAUCCACCCAGAGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((.(((..(.------(((((((.((((.(..(((....)))..).)))).)...)))))))....((((((.......)))))).)))))))..... ( -42.70)
>DroEre_CAF1 7377 92 - 1
UGGCGGAGCAGGA------GGUGGUGG---CGGUGGUGGAGCCACUGCAUCCGGAACAUCCACGCAGCGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((..((.(((------.(..((((---(.........)))))..).)))((.....))..))(((.((((((.......)))))).)))))))..... ( -38.80)
>DroYak_CAF1 16329 95 - 1
UGGCGGAGCAGGA------GGUGGAGGUGGUGCUGGUGGAGCCACUGCAUCCGGAACAUCCACGCAGCGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((.(((....------.(((((.(((((((.((((....)))))))))....)).)))))(((((....(......).)))))...)))))))..... ( -36.60)
>consensus
UGGCGGAGCAGGA______GGUGGAGGUGGAGGUGGUGGAGCCACUGCGUCCGGUACAUCCACCCAGAGGUGCGGGGGAGAGCUGCACAGCUCGUCGGACG
.((((.(((..........((((((..((((.((((((....)))))).)))).....)))))).....((((((.......)))))).)))))))..... (-34.44 = -36.24 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:36 2006