Locus 3313

Sequence ID 3L_DroMel_CAF1
Location 9,710,951 – 9,711,042
Length 91
Max. P 0.893569
window5151

overview

Window 1

Location 9,710,951 – 9,711,042
Length 91
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 82.98
Mean single sequence MFE -13.63
Consensus MFE -12.02
Energy contribution -12.28
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.88
SVM decision value 0.98
SVM RNA-class probability 0.893569
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9710951 91 - 23771897
AAUAUAUACAUACAU---------AUCAUAUGUGUUUGCACAACAUUGACUAACCCGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCA
...............---------......((((.(((((....((((((.....(....).....))))))))))).)))).....(((......))). ( -13.80)
>DroSec_CAF1 6096 90 - 1
AAUAUAUACAUACAU---------AUCAUAUGUGUUUGCACAACAUUGACUAAC-CGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCA
...............---------......((((.(((((....((((((....-(....).....))))))))))).)))).....(((......))). ( -13.40)
>DroSim_CAF1 5416 90 - 1
AAUAUAUCCAUACAU---------AUCAUAUGUGUUUGCACAACAUUGACUAAC-CGAAGGCUAUCGUCAAUUGCAACUACAAUUACGAAUUCAAUUUCA
...............---------......((((.(((((....((((((....-(....).....))))))))))).)))).....(((......))). ( -13.40)
>DroEre_CAF1 5583 85 - 1
UAUAUAUGCAUAUAUACUUCUCCGAUCAUAUGUGUUUGCACAGCAUUGACUAAC-CGAAAGCUAUCGUCAAUUGCAAUUCCAAUUA--------------
......((((...((((..............)))).))))..((((((((....-(....).....))))).)))...........-------------- ( -13.94)
>consensus
AAUAUAUACAUACAU_________AUCAUAUGUGUUUGCACAACAUUGACUAAC_CGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCA
..............................((((.(((((....((((((.....(....).....))))))))))).)))).................. (-12.02 = -12.28 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006