Locus 3306

Sequence ID 3L_DroMel_CAF1
Location 9,693,784 – 9,693,904
Length 120
Max. P 0.562263
window5143

overview

Window 3

Location 9,693,784 – 9,693,904
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.17
Mean single sequence MFE -37.24
Consensus MFE -22.64
Energy contribution -22.45
Covariance contribution -0.19
Combinations/Pair 1.48
Mean z-score -1.44
Structure conservation index 0.61
SVM decision value 0.06
SVM RNA-class probability 0.562263
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9693784 120 - 23771897
AUGGCACUUUUGCCGGCCUGCAAGGAGCUCAGUUUGCUAAUCUUGGCAAUGGCAGCGAUUAGCAGCGUGGUGAAGUCCAUGAAGAAGUUGUUGCGCAGGAGUUGAGUGAAGUAUGCGGCU
..((((....))))((((.(((....(((((..(((((((((...((....))...))))))).(((..(..(..((......))..)..)..)))..))..)))))......))))))) ( -43.50)
>DroGri_CAF1 1308 120 - 1
GUUGCACAACUGUUGGCCUGCAGUUGACUCAAUUUAUUGAUUUUUGCGAUGGCUGCAAUCAGCAGUGUGAGAAUCUCCAUGAAGAAAUUGUUGCGCAGCAUUUGACCAAAGUAUUUGGCA
(((((.((((.((..((.....))..))....(((((.((((((..((...((((....))))..))..))))))...)))))......)))).)))))...((.((((.....)))))) ( -34.60)
>DroSec_CAF1 379 120 - 1
GUGGCACUUUUGCCGGCCUGCAAGGAGCUCAGCUUGCUUAACUUGGCAAUGGCAGCGAUUAGCAGUGUGGUGAAUUCCAUGAAGAAGUUGUUGCGCAGGAGUUGAGUGAAGUAUGCGGCU
..((((....))))((((.(((....((((((((((((......)))..(((((((((((..(..(((((......)))))..).))))))))).)).)))))))))......))))))) ( -43.10)
>DroEre_CAF1 514 120 - 1
AUGGCGCUUUUGCUGGCCUGCAAGGAGCUCAGUUUGCUAAUCUUGGCAAUAGCAGCGAUUAGCAGCGUGGUGAAGUCCAUAAAGAAGUUAUUGCGCAGGAGUUGAGUGAAGUAUGAGGCU
..((((....))))(((((.((....(((((..(((((((((...((....))...))))))).(((..((((..((......))..))))..)))..))..)))))......))))))) ( -40.20)
>DroWil_CAF1 4439 120 - 1
GUCACACAUUUAUUACUCUGAAGUGAGCUCAGUUUGUUGAUCUUGGCCACGGCUGCCAUGAGCAGUGUAAGAAAUUCCAUAAAAAAAUUGUUUCGCAGCAUUUGAGCAAAAUAAUUGGCA
(((((((.((((......))))))).((((((..(((((............(((((.....)))))....(((((..............))))).))))).))))))........)))). ( -27.04)
>DroYak_CAF1 510 120 - 1
AUCGCACUCUUACUGGCCUGCAAGGAGCUCAGUUUGCUAAUCUUGGCAAUGGCAGCGAUUUGCAGUGUUGUGAAGUCCAUGAAGAAGUUGUUGCGCAGGAGUUGGGUGAAGUAUGUGGCU
.(((((..(((.(..(((((((((..((((...((((((....))))))..).)))..))))).((((.(..(..((......))..)..).)))).)).))..)...)))..))))).. ( -35.00)
>consensus
AUGGCACUUUUGCUGGCCUGCAAGGAGCUCAGUUUGCUAAUCUUGGCAAUGGCAGCGAUUAGCAGUGUGGUGAAGUCCAUGAAGAAGUUGUUGCGCAGGAGUUGAGUGAAGUAUGUGGCU
...((..((((((......)))))).((((((..((((((((...((....))...))))))))(((..((((..((......))..))))..))).....))))))..........)). (-22.64 = -22.45 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:27 2006