Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,687,571 – 9,687,662 |
Length | 91 |
Max. P | 0.903871 |
Location | 9,687,571 – 9,687,662 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.58 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -32.21 |
Energy contribution | -32.18 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.10 |
Mean z-score | -1.47 |
Structure conservation index | 0.93 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9687571 91 - 23771897 GCGUAAAGGAACGACCAGGAGAGCACC-----AAGAUGACCUCGUACGUGCGUGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU .(((......)))......(((((...-----....(((..(((((((((.....)))))))))..)))(((((((((...))))))))).))))) ( -35.50) >DroSec_CAF1 9248 91 - 1 GCGUAAAGGAACGACCAGGAGAGCACC-----AAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU .(((......)))......(((((...-----....(((..(((((((((.....)))))))))..)))(((((((((...))))))))).))))) ( -35.50) >DroSim_CAF1 7102 91 - 1 GCGUAAAGGAACGACCAGGAGAGCACU-----AAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU .(((......)))......(((((...-----....(((..(((((((((.....)))))))))..)))(((((((((...))))))))).))))) ( -35.50) >DroEre_CAF1 11519 91 - 1 GCGUAAAGGAACGACCAGGAGAGCACC-----AAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU .(((......)))......(((((...-----....(((..(((((((((.....)))))))))..)))(((((((((...))))))))).))))) ( -35.50) >DroYak_CAF1 6492 91 - 1 GCGUAAAGGAACGACCAGGAGAGGACA-----AAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU ((.(((((............((((.((-----....)).))))(((((((.....)))))))..)))))(((((((((...))))))))).))... ( -34.30) >DroPer_CAF1 2234 90 - 1 GCUUCAAGGAAAC------AGUGCAAUAAGAAAAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUCAGCGGCGAGCCUGGCUCGUCGGAGCUCU (((((..(....)------...............(.(((..(((((((((.....)))))))))..))).)(((((((...))))))))))))... ( -32.40) >consensus GCGUAAAGGAACGACCAGGAGAGCACC_____AAGAUGACCUCGUACGUGCGCGCCAUGUACGACUUUACCGGGGAGCCGGGCUCCUCGGAGCUCU .(((......)))......(((((............(((..(((((((((.....)))))))))..)))(((((((((...))))))))).))))) (-32.21 = -32.18 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:26 2006