Locus 3304

Sequence ID 3L_DroMel_CAF1
Location 9,686,567 – 9,686,674
Length 107
Max. P 0.500000
window5141

overview

Window 1

Location 9,686,567 – 9,686,674
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.43
Mean single sequence MFE -27.48
Consensus MFE -19.18
Energy contribution -19.42
Covariance contribution 0.24
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9686567 107 + 23771897
AUGGAUAUGAUCUCCAUUUAAAUUUUCUCAGCAAAAAAGGGUCACUUUUAAGGUCAACUCAGUUGGAAAAUGUUGGCCGGCAAUUAGUGCGGAGUUUCGAUAAACAA
.((..(((((.((((...................(((((.....)))))..(((((((...(((....)))))))))).(((.....)))))))..)).)))..)). ( -22.80)
>DroSec_CAF1 8254 104 + 1
GUAUAUAUACUCUGCAUUUCAAUUUUCUCAGCAAAAA--GGUCACUU-UUGGGUCAACUCAGUUGGAAAAUGUUGGCCGGCAAUUAGUGCGGAGUUUCGAUAAACAA
((.(((..((((((((((..((((.((......((((--(....)))-)).(((((((...(((....)))))))))))).))))))))))))))....))).)).. ( -27.70)
>DroSim_CAF1 6100 105 + 1
GUAGAUAUACUCUGCAUUUCAAUUUUCUCAGCAAAAA--GGUCACUUUUUGGGUCAACUCAGUUGGAAAAUGUUGGCCGGCAAUUAGUGCGGAGUUUCGAUAAACAA
...((...((((((((((..((((.((....((((((--(....)))))))(((((((...(((....)))))))))))).)))))))))))))).))......... ( -31.30)
>DroEre_CAF1 10521 103 + 1
GUAGAUAUACUCUGCAUUUAAAUUUUCCCAACAAAGA--GGUCAUCU--UGGGUCAACUCAGUUGGAAAAUGUUGCCCGGCAAUUAGUGCGGAGUUUCGAUAAACAA
...((...((((((((((...(((((((.(((.((((--.....)))--)(((....))).))))))))))(((((...))))).)))))))))).))......... ( -28.10)
>DroYak_CAF1 5493 104 + 1
GUAGAUAUACUCCCCAUUUACAUUUUCUCAACAAAAA--GGUCACUU-AAGGGUCAACUCAGUUGGAAAAUGUUGGCGGGCAAUUAGUGCGGAGUUUCGAUAAACAA
...((...(((((((.(..((((((((.((((...((--(....)))-..(((....))).))))))))))))..).))(((.....)))))))).))......... ( -27.50)
>consensus
GUAGAUAUACUCUGCAUUUAAAUUUUCUCAGCAAAAA__GGUCACUU_UUGGGUCAACUCAGUUGGAAAAUGUUGGCCGGCAAUUAGUGCGGAGUUUCGAUAAACAA
...((...((((((((((...((((((.((((.......(..(........)..)......))))))))))((((.....)))).)))))))))).))......... (-19.18 = -19.42 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:25 2006