Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,681,952 – 9,682,047 |
Length | 95 |
Max. P | 0.520641 |
Location | 9,681,952 – 9,682,047 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.20 |
Mean single sequence MFE | -35.74 |
Consensus MFE | -15.55 |
Energy contribution | -16.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.32 |
Mean z-score | -1.89 |
Structure conservation index | 0.44 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9681952 95 + 23771897 CUCCAACUACAACAGCUGCUCCACCACCAGCCGCCGCUGCGCCUGUGCCGGU------------GGCCACCGCUGCGCCUCCGGCACCAGCUCCUGCGGAGCACAAA ..............(.((((((.....((((....)))).((..(((((((.------------(((((....)).))).)))))))..))......)))))))... ( -38.20) >DroPse_CAF1 3867 100 + 1 ----AAGUGCAGCUGCUGCCGCUCC---UCCUGCCGCUGUGCCUGCUCCAGCAGUGCCUUCUCCAGCCCCUGCUCCUGCAUCGGCUCCGGCUCCGGCGGAACACAAG ----..(((...((((((..((...---....)).((((.((((((....)))).)).......((((..(((....)))..)))).))))..))))))..)))... ( -32.90) >DroSec_CAF1 3627 95 + 1 CUCCAGGUACAACUCCUUGUCCGCCACCACCCGCCGCUGCGCCUGCACCGUU------------GGCCACCGCUGCGCCUCCGGCACCAGCUCAGGCGGAGCACAAA ((((.((.((((....))))))(((.....(((.((.(((....))).)).)------------)).....((((.(((...)))..))))...)))))))...... ( -29.70) >DroSim_CAF1 888 95 + 1 CUCCAGGUACAACUCCUUGUCCGCCAGCACCCGCCGCUGCGCCUGCACCGUU------------AGCCACCGCUGCGCCUCCGGCACCAGCUCAGGCGGAGCACAAA ((((.((.((((....))))))((((((....((((..((((..((......------------.......)).))))...))))....)))..)))))))...... ( -30.62) >DroEre_CAF1 3436 92 + 1 CUCCAAGUACAACUGCUGCUCCGCU---CCCCGCCGCGGCGCCUGUGCCAGU------------AGCCACCACUGCAGCACCGGCACCAGCGCCGGCGGAGCACAAG .....((((....)))).....(((---(((((.(((((.(((.((((..((------------((......)))).)))).))).)).))).))).)))))..... ( -40.00) >DroYak_CAF1 888 92 + 1 CUCCAAGUACAACUGCUGCUCCACC---CCCCGCCGCUGCGCCUGUGCCGGU------------GGCCACCACUGCGGCUCCGGCACCAGCGCCGGCGGAGCACAAA .............((.((((((...---....((((..((((..(((((((.------------((((........)))))))))))..)))))))))))))))).. ( -43.01) >consensus CUCCAAGUACAACUGCUGCUCCGCC___ACCCGCCGCUGCGCCUGCGCCGGU____________AGCCACCGCUGCGCCUCCGGCACCAGCUCCGGCGGAGCACAAA ..............................(((((((((.(((((((.(((..................))).)))).....)))..))))...)))))........ (-15.55 = -16.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:21 2006