| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,679,318 – 9,679,420 |
| Length | 102 |
| Max. P | 0.527110 |
| Location | 9,679,318 – 9,679,420 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.16 |
| Mean single sequence MFE | -34.43 |
| Consensus MFE | -27.58 |
| Energy contribution | -28.13 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9679318 102 + 23771897 AGGAA------------AAGGAGGUGGUGUCAGCGGUCACUCCUGCUUCUCUACCAAUACCCAAGCCCGCU------GCCGCACCCGCCACUUCGCCCACGACGCCCAGCGUCAAUCCGA .(((.------------...(((((((((...(((((.......((((..............)))).....------)))))...)))))))))......(((((...)))))..))).. ( -33.44) >DroSim_CAF1 78649 102 + 1 AGGAA------------ACGGAGGUGGUGUCAGCAGUCACUCCUGCUUCACUACCAAUACCCAAGCCCGCU------GCCGCACCCGCCACUUCGCCCACGACGCCCAGCGUCAAUCCCA .(((.------------.(((.(((((((..(((((......))))).))))))).............((.------...))..))).............(((((...)))))..))).. ( -31.60) >DroYak_CAF1 75463 120 + 1 GGGAAACGGUAACGGAAAAGGAGGUGGUGUCAGCUGCAACUCCUACUCCUCUGCCAACACCCAAGCCCGCUGCCGCUGCCGCACCCGCCACUUCGCCGACGACGCCCAGCGUCAAUCCCA ((((........(((..(((..((((((((((((.(((................................))).))))..))).))))).)))..)))..(((((...)))))..)))). ( -38.25) >consensus AGGAA____________AAGGAGGUGGUGUCAGCAGUCACUCCUGCUUCUCUACCAAUACCCAAGCCCGCU______GCCGCACCCGCCACUUCGCCCACGACGCCCAGCGUCAAUCCCA .(((................(((((((((..(((((......))))).................((..((.......)).))...)))))))))......(((((...)))))..))).. (-27.58 = -28.13 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:18 2006