Locus 330

Sequence ID 3L_DroMel_CAF1
Location 950,791 – 950,882
Length 91
Max. P 0.843274
window494

overview

Window 4

Location 950,791 – 950,882
Length 91
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -24.17
Consensus MFE -17.48
Energy contribution -17.45
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.72
SVM decision value 0.76
SVM RNA-class probability 0.843274
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 950791 91 - 23771897
CU-UUUGCCUUU---------CUGGCAAAUGAUAAAAACUGUCGACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGUCGUUUGCCG----------------
..-.........---------..((((((((((((((.(((((...((...))..))...(((((((.....))).))))...))))))))))))))))).---------------- ( -21.80)
>DroVir_CAF1 104769 105 - 1
CU-UUCGCA--C---------UUGGCAAAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCGUUUGUCGUUGCCGUUGCCGUUGC
..-...(((--.---------.((((((.(((((((..((((((......)))))).......(((...(((((.......)))))...)))..))))))))))))).)))...... ( -27.50)
>DroGri_CAF1 95058 96 - 1
CU-UUUGCA--C---------UUGGCAAAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCAGUUUGUCGUUGCCGU---------
..-......--.---------..(((((.(((((((..((((((......))))))......((((...(((((.......)))))...)))).))))))))))))..--------- ( -25.90)
>DroWil_CAF1 123573 103 - 1
GUGGUUGCCUUUCUCUGGCAGUUGGCAAAUGAUAAAAACAGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCGUUUGCCGUU--------------
....(((((.......)))))..((((((((.........(....)(((..(((((....(((((((.....))).))))..)))))..)))))))))))...-------------- ( -28.00)
>DroMoj_CAF1 109743 91 - 1
CU-UUCGCA--C---------UUGGCAAAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCGUUUGUCGUU--------------
..-..((((--.---------.(((((((...(((...((((((......))))))....(((((((.....))).))))..)))..)))))))..)).))..-------------- ( -21.70)
>DroAna_CAF1 92556 97 - 1
CU-CUCUCCUUG---CGGCAGCUGGCAAAUGAUAAAAACUGGCGACGCACUGCUAAAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCGUUUCCAG----------------
..-......(((---(........))))..........((((.((((((..(((((....(((((((.....))).))))..)))))..)).)))).))))---------------- ( -20.10)
>consensus
CU_UUCGCA__C_________UUGGCAAAUGAUAAAAACUGGCAACGCACUGCUAGAAAAUAUGCAUUUUUAAUGCCAUAAAUUAGUUUUGCCGUUUGCCGUU______________
.......................((((((((.........(....)(((..(((((....(((((((.....))).))))..)))))..)))))))))))................. (-17.48 = -17.45 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:24 2006