| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 119,152 – 119,263 |
| Length | 111 |
| Max. P | 0.980527 |
| Location | 119,152 – 119,263 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -42.75 |
| Consensus MFE | -27.06 |
| Energy contribution | -28.51 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 119152 111 + 23771897 CGACAGAGGCAACAAUGCCGGCUAUGGCCAAGGAGAAAGCAUCAGCAACAGUGUCCUUGGGCGAGUCGAAUUUCAGAGAUAUCAACCUAAAAGACUUGGCCGUGGUCGUCG------ ((((...((((....))))(((((((((((((..((((((....)).....((((....)))).......)))).((....))...........)))))))))))))))))------ ( -40.30) >DroVir_CAF1 148604 114 + 1 CAACGGCAA---CAAUGCCGGCGAUGCCAAAAGAAAAAGCAACAACUGCCGUUUCCCUAAGCGAAUCAAAUUUCUCGGCUCUAAAGCUCAAGGAGCUGGCGGUUGUUGUUGGCGCAA ...(((((.---...)))))..(.(((((.........(((((((((((((.((((....(.(((......))).)((((....))))...)))).))))))))))))))))))).. ( -41.30) >DroSec_CAF1 54579 111 + 1 CGACAGCGGCAACAAUGCCGGCUAUGGCCAAGGAAAAAGCAUCAGCAACAGUGUCCUUGGGCGAGUCGAAUUUCAGAGAUAUCAACCUAAAAGACUUGGCCGUGGUCGUCG------ ((((...((((....))))(((((((((((((((((..((....)).....((((....)))).......)))).((....))...........)))))))))))))))))------ ( -40.20) >DroEre_CAF1 77268 111 + 1 CGACAGCGGCAACAAUGCCGGCUAUGGCCAAGGAGAAAGCCUCAGCAACAGUGUCCUUGGGCGAGUCGAAUUUCAGAGAUAUCAACCUAAAAGACUUGGCCGUGGUCGUCG------ ((((...((((....))))(((((((((((((((((..(.(((.((....))(((....)))))).)...)))).((....))...........)))))))))))))))))------ ( -41.40) >DroYak_CAF1 72423 111 + 1 CGACAGCGGCAACAAUGCCGGCUAUGGCCAAGGAGAAAGCCUCAGCAACAGUGUCCUUGGGCGAGUCGAAUUUUAGAGAUAUCAACCUAAAAGACUUGGCCGUGGUCGUCG------ ((((...((((....))))(((((((((((((..((..((((..(((....)))....))))...))...((((((..........))))))..)))))))))))))))))------ ( -43.00) >DroAna_CAF1 29449 102 + 1 CUACAGCGGCUACCAUGCCGGCUAUGGCCAAGGAGAAGGCCUCAGCAGCAGUCUCCUUGGGCGAGUCGAACU------------ACCUGACGGAGCUGGCCGUGGUGGUGGGC---A ......(.(((((((((((((((.((.(((((((((..((.......))..))))))))).)).((((....------------...))))..)))))).))))))))).)..---. ( -50.30) >consensus CGACAGCGGCAACAAUGCCGGCUAUGGCCAAGGAGAAAGCAUCAGCAACAGUGUCCUUGGGCGAGUCGAAUUUCAGAGAUAUCAACCUAAAAGACUUGGCCGUGGUCGUCG______ ((((...(((......)))(((((((((((((((.(..((....)).....).))))))..((((((.........................)))))))))))))))))))...... (-27.06 = -28.51 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:21 2006