Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,679,158 – 9,679,278 |
Length | 120 |
Max. P | 0.910407 |
Location | 9,679,158 – 9,679,278 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -41.43 |
Consensus MFE | -40.13 |
Energy contribution | -40.13 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.97 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9679158 120 + 23771897 CCUCCGUUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUAAAAUUGGAAACCAAAACGCACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).((((((((..((.........(((((.....))))).......((((...))))...))))))).........(((((..........))))))))....... ( -42.70) >DroSim_CAF1 78489 120 + 1 CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUUAAAUUGGAAACCAAAACACACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCGCCCAAG ((((((....)))))).((((((((.............(((((.....))))).(((...((((...)))))))..))))).........(((((..........))))))))....... ( -41.40) >DroYak_CAF1 75309 114 + 1 CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGUACGGCGGCCGUUAAAUUGGAAACCAAAACACCCGUCA------CAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).(((((((..............(((((.....))))).(((...((((...)))))))...)))).------..(((((..........))))))))....... ( -40.20) >consensus CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUUAAAUUGGAAACCAAAACACACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).(((((((..............(((((.....))))).......((((...))))......)))).........(((((..........))))))))....... (-40.13 = -40.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:17 2006