| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,678,958 – 9,679,078 |
| Length | 120 |
| Max. P | 0.889127 |
| Location | 9,678,958 – 9,679,078 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -40.62 |
| Consensus MFE | -39.25 |
| Energy contribution | -39.58 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.889127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9678958 120 + 23771897 GGGGCAAGGCCACAAGGGCAAAGCAAAAGUUCGGACACCUGAAGGUGGCCAAUACGCCGCGCAUCAAUAAGAAUGUGCUGCGCGACAUUAAAACGGAACCAAAGUGCAGCUCGGAAGCCG ..(((..((((((.(((.(..(((....)))..)...)))....))))))......(((.((((........))))(((((((....................))))))).)))..))). ( -38.15) >DroSim_CAF1 78289 120 + 1 GGGGCAAGGCCACAAGGGCCAAGCAAAAGUUCGGACACCUGAAGGUGGCCAAUACGCCGCGCAUCAAUAAGAAUGUGCUGCGCGACAUUAAAACGGAACCAAAGUGCAGCUCGGAAGCCG ..(((..((((((.(((.((.(((....))).))...)))....))))))......(((.((((........))))(((((((....................))))))).)))..))). ( -40.95) >DroYak_CAF1 75109 120 + 1 GGGGCAAGGCCACAAGGGCCAAGCAAAAGUUCGGACACCUGAAGGUGGCCAAUACGCCGCGCAUCAACAAGAAUGUGCUGCGCGACAUUAAAACGGAACCAAAGUGCAGCUCGGAUGCCG (.(((..((((((.(((.((.(((....))).))...)))....)))))).....))).)(((((.(((....)))(((((((....................)))))))...))))).. ( -42.75) >consensus GGGGCAAGGCCACAAGGGCCAAGCAAAAGUUCGGACACCUGAAGGUGGCCAAUACGCCGCGCAUCAAUAAGAAUGUGCUGCGCGACAUUAAAACGGAACCAAAGUGCAGCUCGGAAGCCG ..(((..((((((.(((.((.(((....))).))...)))....))))))......(((.((((........))))(((((((....................))))))).)))..))). (-39.25 = -39.58 + 0.33)
| Location | 9,678,958 – 9,679,078 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -42.50 |
| Consensus MFE | -40.37 |
| Energy contribution | -40.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9678958 120 - 23771897 CGGCUUCCGAGCUGCACUUUGGUUCCGUUUUAAUGUCGCGCAGCACAUUCUUAUUGAUGCGCGGCGUAUUGGCCACCUUCAGGUGUCCGAACUUUUGCUUUGCCCUUGUGGCCUUGCCCC .((((...(.((.(((....(((((.......((((((((((...((.......)).))))))))))...((.((((....)))).)))))))..)))...)).)....))))....... ( -39.60) >DroSim_CAF1 78289 120 - 1 CGGCUUCCGAGCUGCACUUUGGUUCCGUUUUAAUGUCGCGCAGCACAUUCUUAUUGAUGCGCGGCGUAUUGGCCACCUUCAGGUGUCCGAACUUUUGCUUGGCCCUUGUGGCCUUGCCCC (((((....)))))......(((((.......((((((((((...((.......)).))))))))))...((.((((....)))).)))))))...((..((((.....))))..))... ( -42.30) >DroYak_CAF1 75109 120 - 1 CGGCAUCCGAGCUGCACUUUGGUUCCGUUUUAAUGUCGCGCAGCACAUUCUUGUUGAUGCGCGGCGUAUUGGCCACCUUCAGGUGUCCGAACUUUUGCUUGGCCCUUGUGGCCUUGCCCC .((((........(((....(((((.......((((((((((..(((....)))...))))))))))...((.((((....)))).)))))))..)))..((((.....)))).)))).. ( -45.60) >consensus CGGCUUCCGAGCUGCACUUUGGUUCCGUUUUAAUGUCGCGCAGCACAUUCUUAUUGAUGCGCGGCGUAUUGGCCACCUUCAGGUGUCCGAACUUUUGCUUGGCCCUUGUGGCCUUGCCCC .(((.........(((....(((((.......((((((((((...((.......)).))))))))))...((.((((....)))).)))))))..)))..((((.....))))..))).. (-40.37 = -40.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:16 2006