| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,672,179 – 9,672,271 |
| Length | 92 |
| Max. P | 0.663987 |
| Location | 9,672,179 – 9,672,271 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Mean single sequence MFE | -31.51 |
| Consensus MFE | -17.82 |
| Energy contribution | -19.40 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.663987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9672179 92 - 23771897 GACCGCCGCGGUGCAUUCGGAUAAUUCUGAAAGCUCGC---------CUAUCGAUUGACGUAUCGAUAGGGCUUCGGGGAAAGAGCGCGAAAAUUGCUAAC ..((.(((.(((((.((((((....)))))).))...(---------((((((((......)))))))))))).)))))....((((.......))))... ( -32.60) >DroSec_CAF1 67751 92 - 1 GACCGCCGCGCUGCACUUGGACAAUUCUUAAAGCUCGC---------CUAUCGAUUGACGUAUCGAUAGGGCUGCGGGGAAAUAGCGCGAAAGCUUCUAUC ..((((.(((((......(((....)))...)))...(---------((((((((......))))))))))).))))....((((.((....))..)))). ( -31.80) >DroSim_CAF1 70929 91 - 1 GACCGCCGCGCUGCAUUUGGACAAUUCUUAAAGCUCGC---------CUAUCGAUUGA-GUAUCGAUAGGGCUUCGGGGAAAUAGCGCGAAAGCUUCUAUC ....((((((((((....).....((((..((((...(---------((((((((...-..)))))))))))))..))))..)))))))...))....... ( -30.30) >DroEre_CAF1 68104 91 - 1 GACCGCGGCGCCGCAUUUGGAAAAUUCUGAAAGCUCGC---------CUAUCGAUAGGCGUAUCGAUGGGCUU-CUGGAAAAGUGCGCGAAAUGUGGUAUC .((((((.((((((.((..(((......((....))((---------(((((((((....)))))))))))))-)..))...))).)))...))))))... ( -35.50) >DroYak_CAF1 68321 91 - 1 GGCCGCCGCGCCGCGUUUGGAAAAUUCUGAAAGCUCGC---------CUAUCGAUAGGCGGAUCGAUAGAGCU-UCGGGAAAGUGCGCGAAAUGUGGUAUC .(((((((((((((.((..((....))..)).))..((---------((((((((......)))))))).)).-........).)))))....)))))... ( -32.80) >DroAna_CAF1 78819 99 - 1 GCCCGCAGGGCCUCAUGCGAAAAAUUCUGAAAGCUCGCCGACACUUCCUAUCGAUUGGCGUAUCGAUAGAGGUUCUAGAAAUUGGCGCGAAAAAUU--UGC (((..(((((((((..((((..............))))..........(((((((......))))))))))))))).).....)))((((.....)--))) ( -26.04) >consensus GACCGCCGCGCCGCAUUUGGAAAAUUCUGAAAGCUCGC_________CUAUCGAUUGACGUAUCGAUAGGGCUUCGGGGAAAGAGCGCGAAAACUGCUAUC ......((((((((.((((((....)))))).)).............((((((((......))))))))..............))))))............ (-17.82 = -19.40 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:12 2006