Locus 3293

Sequence ID 3L_DroMel_CAF1
Location 9,657,012 – 9,657,132
Length 120
Max. P 0.699643
window5123

overview

Window 3

Location 9,657,012 – 9,657,132
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.50
Mean single sequence MFE -45.60
Consensus MFE -38.62
Energy contribution -38.18
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.80
Structure conservation index 0.85
SVM decision value 0.35
SVM RNA-class probability 0.699643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9657012 120 + 23771897
GUCCAACACCACCGCCAUCUCGGUGGCCUUCUCCAAUCUCUCCUACAAGUUCGAUCUGAUGUUCAAGAAGCGGGCCUUCGUCCAUUGGUACGUGGGCGAGGGCAUGGAGGAGGGCGAGUU
....(((.((((((......))))))(((((((((...............(((.(((........)))..)))((((((((((((......)))))))))))).)))))))))....))) ( -48.80)
>DroVir_CAF1 53409 120 + 1
AUCCAACACGACGGCCAUAUCGGUGGCCUUCUCCAAUCUGGCCUACAAAUUUGAUCUGAUGUUCAAGAAGCGCGCCUUCGUCCACUGGUACGUGGGCGAGGGCAUGGAGGAGGGCGAGUU
.(((........((((((....))))))(((((((.....((((.....(((((........))))).)).))((((((((((((......)))))))))))).))))))))))...... ( -48.10)
>DroGri_CAF1 49508 120 + 1
CUCCAAUACGACAGCGAUAGCGGUGGCCUUCUCCAAUCUGUCGUACAAGUUCGAUCUGAUGUUCAAGAAGCGCGCCUUCGUCCACUGGUAUGUGGGCGAGGGCAUGGAGGAGGGCGAGUU
(((.......((.((....)).))(.((((((((((((.((((........))))..))).............((((((((((((......)))))))))))).))))))))).)))).. ( -50.30)
>DroWil_CAF1 74004 120 + 1
AUCGAACACCACAGCCAUCAGUGUGGCCUUCUCGAAUCUGUCAUACAAAUUCGAUUUGAUGUUCAAGAAGCGUGCCUUUGUCCAUUGGUAUGUUGGCGAGGGCAUGGAGGAGGGCGAGUU
.(((....(((((........)))))(((((((...(((..(((.(((((...))))))))....)))..((((((((((((.((......)).))))))))))))))))))).)))... ( -40.60)
>DroMoj_CAF1 55611 120 + 1
CUCCAACACGACGGCCAUCAGCGUGGCCUUUUCCAAUCUGGCCUACAAAUACGAUCUGAUGUUCAAGAAGCGCGCCUUCGUCCAUUGGUAUGUGGGCGAGGGCAUGGAAGAGGGCGAAUU
...........((.((.((.((((((((...........))))...........(((........))).))))((((((((((((......))))))))))))......)))).)).... ( -43.40)
>DroAna_CAF1 64255 120 + 1
GUCCAAUACAACGGCUAUAUCGGUGGCCUUCUCCAACCUGUCCUACAAGUUCGAUCUGAUGUUCAAGAAGCGGGCCUUCGUCCACUGGUACGUCGGCGAGGGCAUGGAGGAGGGCGAGUU
((((........((((((....))))))(((((((...............(((.(((........)))..)))(((((((((.((......)).))))))))).)))))))))))..... ( -42.40)
>consensus
AUCCAACACGACGGCCAUAUCGGUGGCCUUCUCCAAUCUGUCCUACAAAUUCGAUCUGAUGUUCAAGAAGCGCGCCUUCGUCCACUGGUACGUGGGCGAGGGCAUGGAGGAGGGCGAGUU
.......................((.(((((((((................((.(((........)))..)).((((((((((((......)))))))))))).))))))))).)).... (-38.62 = -38.18 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:08 2006