Locus 3291

Sequence ID 3L_DroMel_CAF1
Location 9,650,129 – 9,650,244
Length 115
Max. P 0.761671
window5120

overview

Window 0

Location 9,650,129 – 9,650,244
Length 115
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 89.98
Mean single sequence MFE -35.32
Consensus MFE -24.66
Energy contribution -25.30
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -2.52
Structure conservation index 0.70
SVM decision value 0.50
SVM RNA-class probability 0.761671
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9650129 115 + 23771897
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGUAAUUCAAUUCAAUGCAAGU--GCGCUCCACUUGCUAGAAGGGAUUAGAAAUUGGGAAUCCAGUUGACUGGGUAAAUUCUUUAA
((((((((((((((((((((.(.....)))))).)))))..(((...((((((--(.....)))))))..)))))).)))......))))((((((....))))))........... ( -36.40)
>DroSec_CAF1 45673 115 + 1
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGUAAUUCAAUUCAAUGCAAGU--GCGCUCCACUUGCUUGAAGGGAUUAGAAAUUGGGAAUCCAGUUGACUGGGUAAAUUAUUUGA
((((((((((((((((((((.(.....)))))).)))))..(((((.((((((--(.....))))))))))))))).)))......))))((((((....))))))........... ( -39.30)
>DroSim_CAF1 48277 115 + 1
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGUAAUUCAAUUCAAUGCAAGU--GCGCUCCACUCGCUUGAAGGGAUUAGAAAUUGGGAAUCCAGUUGACUGGUUAAAUUCUUUGA
.......(((((((((((((.(.....)))))).)))))..(((((.((.(((--(.....)))).))))))))))(((((.((((((....))))))..)))))............ ( -33.40)
>DroEre_CAF1 45600 115 + 1
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGUAAUUCAAUUCAUGGCAAGU--GCCCUCUACUUGCUGGAAGGGAUUAGAAAUUGGGAUUCAAAUAGACAGGGUAACUUCUUUGA
((((((((((((((((((((.(.....)))))).)))))..(((.((((((((--(.....))))))))))))))).)))......))))..........(((((......))))). ( -32.10)
>DroYak_CAF1 45884 117 + 1
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGAAAUUCGAUUCAUGGCAAGUGUGCCCUCCACUUGCCAAAAGGAAUUAGAAAUUGGGAUUCAAAUAGACAGGGUAGCUUCUUUAA
.((((..(((((.(((((((.(.....)))))))).((((((((.(((((((((.......)))))))))....))))).))).)))))..((.....)).))))............ ( -35.40)
>consensus
UCCUUAACCCGAAUUCCGUGUGGAAAACCGCGGUAAUUCAAUUCAAUGCAAGU__GCGCUCCACUUGCUAGAAGGGAUUAGAAAUUGGGAAUCCAGUUGACUGGGUAAAUUCUUUGA
......((((((((((((((.(.....)))))).)))))(((((...((((((.........))))))......)))))...((((((....))))))....))))........... (-24.66 = -25.30 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:04 2006