Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 950,276 – 950,379 |
Length | 103 |
Max. P | 0.953224 |
Location | 950,276 – 950,379 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -30.67 |
Consensus MFE | -17.27 |
Energy contribution | -18.57 |
Covariance contribution | 1.29 |
Combinations/Pair | 1.19 |
Mean z-score | -3.26 |
Structure conservation index | 0.56 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 950276 103 - 23771897 GGCUGACACGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCACUGGGGGAACUUGGUCCUCGAUCCCUC-CCCC------AUCACCAUCA .(((((((.(((....)))..............(((((......)))))))))))).......(((((((....((((...))))..))-))))------)......... ( -34.30) >DroSec_CAF1 85267 103 - 1 GGCUGUCAUGCCAAGCGGCAAAAUCACAGAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGGGGAACUUCGUCCUCGAUCCCUC-CCAC------AUCGCCAUCC .((((.((((((....)))).............(((((......))))))).))))......(((((((....(((....)))...)))-))))------.......... ( -31.80) >DroSim_CAF1 77171 103 - 1 GGCUGACAUGCCAAGCGGCAAAAUCACAGAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCACUGGGGCAACUUCGUCCUCGAUCCCUC-CCCC------AUCGCCAUCC .(((((((((((....)))).............(((((......)))))))))))).......(((((.....(((....)))......-))))------)......... ( -31.10) >DroEre_CAF1 87070 109 - 1 GGCUGACAUGCCAACCGGCAAAAUCACACAACCGCAUUCAAAUUAAUGCUGUCAGCACAUCAGUGG-GGAACUUGGUCCUCGAUCCCUAUCCCUGUCCCUAUUGCUAUGC .(((((((((((....)))).............(((((......)))))))))))).(((((((((-(((.(..((..............))..))))))))))..))). ( -33.34) >DroYak_CAF1 89302 104 - 1 GGCUGACAUGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGAGGAACUUGGUCCUCGAUCCCCAUCCCC------AUCGCUAUUC .(((((((((((....)))).............(((((......)))))))))))).....(((((((((......)))))(((....)))...------..)))).... ( -30.50) >DroAna_CAF1 92099 90 - 1 CGGUGGAAUCCUCGCCACCGAAAUCACACAACCGCAGUGAAAUUAAUGCUGUCAGCACAUCGGUGG-GUAACUUUAUCC-------------AC------AUCCUCAUCC ..(((((.......(((((((..((((.........))))......(((.....)))..)))))))-.........)))-------------))------.......... ( -22.99) >consensus GGCUGACAUGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGGGGAACUUGGUCCUCGAUCCCUC_CCCC______AUCGCCAUCC .(((((((((((....)))).............(((((......)))))))))))).........(((((......)))))............................. (-17.27 = -18.57 + 1.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:23 2006