Locus 329

Sequence ID 3L_DroMel_CAF1
Location 950,276 – 950,379
Length 103
Max. P 0.953224
window493

overview

Window 3

Location 950,276 – 950,379
Length 103
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -30.67
Consensus MFE -17.27
Energy contribution -18.57
Covariance contribution 1.29
Combinations/Pair 1.19
Mean z-score -3.26
Structure conservation index 0.56
SVM decision value 1.43
SVM RNA-class probability 0.953224
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 950276 103 - 23771897
GGCUGACACGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCACUGGGGGAACUUGGUCCUCGAUCCCUC-CCCC------AUCACCAUCA
.(((((((.(((....)))..............(((((......)))))))))))).......(((((((....((((...))))..))-))))------)......... ( -34.30)
>DroSec_CAF1 85267 103 - 1
GGCUGUCAUGCCAAGCGGCAAAAUCACAGAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGGGGAACUUCGUCCUCGAUCCCUC-CCAC------AUCGCCAUCC
.((((.((((((....)))).............(((((......))))))).))))......(((((((....(((....)))...)))-))))------.......... ( -31.80)
>DroSim_CAF1 77171 103 - 1
GGCUGACAUGCCAAGCGGCAAAAUCACAGAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCACUGGGGCAACUUCGUCCUCGAUCCCUC-CCCC------AUCGCCAUCC
.(((((((((((....)))).............(((((......)))))))))))).......(((((.....(((....)))......-))))------)......... ( -31.10)
>DroEre_CAF1 87070 109 - 1
GGCUGACAUGCCAACCGGCAAAAUCACACAACCGCAUUCAAAUUAAUGCUGUCAGCACAUCAGUGG-GGAACUUGGUCCUCGAUCCCUAUCCCUGUCCCUAUUGCUAUGC
.(((((((((((....)))).............(((((......)))))))))))).(((((((((-(((.(..((..............))..))))))))))..))). ( -33.34)
>DroYak_CAF1 89302 104 - 1
GGCUGACAUGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGAGGAACUUGGUCCUCGAUCCCCAUCCCC------AUCGCUAUUC
.(((((((((((....)))).............(((((......)))))))))))).....(((((((((......)))))(((....)))...------..)))).... ( -30.50)
>DroAna_CAF1 92099 90 - 1
CGGUGGAAUCCUCGCCACCGAAAUCACACAACCGCAGUGAAAUUAAUGCUGUCAGCACAUCGGUGG-GUAACUUUAUCC-------------AC------AUCCUCAUCC
..(((((.......(((((((..((((.........))))......(((.....)))..)))))))-.........)))-------------))------.......... ( -22.99)
>consensus
GGCUGACAUGCCAAGCGGCAAAAUCACACAACCGCAUUUAAAUUAAUGCUGUCAGCACAUCAGUGGGGGAACUUGGUCCUCGAUCCCUC_CCCC______AUCGCCAUCC
.(((((((((((....)))).............(((((......)))))))))))).........(((((......)))))............................. (-17.27 = -18.57 +   1.29) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:23 2006