Locus 3283

Sequence ID 3L_DroMel_CAF1
Location 9,628,315 – 9,628,409
Length 94
Max. P 0.973965
window5105

overview

Window 5

Location 9,628,315 – 9,628,409
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.67
Mean single sequence MFE -28.78
Consensus MFE -23.82
Energy contribution -23.98
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.83
SVM decision value 1.72
SVM RNA-class probability 0.973965
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9628315 94 - 23771897
ACGUUUUGGAACAUUUGUCC-CCAAGUGCAGAUGUCAAGCGCAGCUGUGAAAAACCGCAGUCUUGUUCGGCGUUUUGUACACGAUUUAACCAGCC
.(((.((((.((....))..-))))(((((((((((.((((..((((((......))))))..)))).)))).))))))))))............ ( -26.90)
>DroSec_CAF1 24077 94 - 1
ACGUUUCCGAACAUUUUUCC-CCAAGUGCAGAUGUCAAGCGCAGCUGUGGAAAACCACAGACUUGUUUGGCGUUUUGUACACGAUUUAACCAGCC
.(((....(((.....))).-....((((((((((((((((.((((((((....)))))).))))))))))).))))))))))............ ( -29.10)
>DroSim_CAF1 26580 94 - 1
ACGUUUUCGAACAUUUUUCC-CCAAGUGCAGAUGUCAAGCGCAGCUGUGGAAAACCACAGUCUUGUUUGGCGUUUUGUACGCGAUUUAACCAGCC
.(((....(((.....))).-....((((((((((((((((..(((((((....)))))))..))))))))).))))))))))............ ( -30.70)
>DroEre_CAF1 23400 94 - 1
ACGCUUUAAAACCUUUUUUCCCCAAGUGCAGAUGUCAAGCGCAGCUGUGGAAAACCACAGUCUUGUU-GGCGUUUUGUACAGGAUUUAGCCAGCG
.(((((((((.(((...........(((((((((((((.((..(((((((....)))))))..))))-)))).)))))))))).)))))..)))) ( -30.40)
>DroYak_CAF1 24212 93 - 1
GCGUUUUAGAACCGUUUUUC-CCAAGUGCAGAUGUCAAGCGCAGCUGUGGAAAACCGCAGUCUUGUU-GGCGUUUUGUACACGAUUUAACCAGCG
((...(((((..(((.....-....(((((((((((((.((..(((((((....)))))))..))))-)))).)))))))))).)))))...)). ( -26.80)
>consensus
ACGUUUUAGAACAUUUUUCC_CCAAGUGCAGAUGUCAAGCGCAGCUGUGGAAAACCACAGUCUUGUU_GGCGUUUUGUACACGAUUUAACCAGCC
.........................(((((((((((.((((..(((((((....)))))))..)))).)))).)))))))............... (-23.82 = -23.98 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:50 2006