Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 949,130 – 949,225 |
Length | 95 |
Max. P | 0.862561 |
Location | 949,130 – 949,225 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -20.89 |
Energy contribution | -20.95 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.78 |
Structure conservation index | 0.87 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 949130 95 - 23771897 --------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUCGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU --------------((((..((......((((((....))))))((((..........))))...))..)).))((((((..((((((((...)))))))))))))).. ( -23.00) >DroSec_CAF1 84143 95 - 1 --------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU --------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20) >DroSim_CAF1 76055 95 - 1 --------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU --------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20) >DroEre_CAF1 86026 95 - 1 --------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCGGGCAAUUUGUAAUCAU --------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20) >DroYak_CAF1 88227 95 - 1 --------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCCGGCAAUUUGUAAUCAU --------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20) >DroAna_CAF1 90807 109 - 1 CCCCUUGGGUUCUGGGGCUUCCUUUGUUGCAAUGUGUUUAUUGUGAAUUUUAUUUAUUGCUUUGCGGUCGUGGCGGUUAUUAAAAUUGCCACUGGCAAUUUGUAAUCAU ((((.........)))).........(..(((((....)))))..).........(((((.((((.(..(((((((((.....)))))))))).))))...)))))... ( -28.40) >consensus ______________GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU ..............((((..((......((((((....))))))((((..........))))...))..)).))((((((..((((((((...)))))))))))))).. (-20.89 = -20.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006