Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,615,600 – 9,615,705 |
Length | 105 |
Max. P | 0.720048 |
Location | 9,615,600 – 9,615,705 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -44.35 |
Consensus MFE | -33.16 |
Energy contribution | -32.00 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.42 |
Mean z-score | -1.35 |
Structure conservation index | 0.75 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9615600 105 + 23771897 GAAAGUCCGUGUGCGGAGGUGACUCCGGUGGCCCCCUGGUUACACACGACAAUGCUCGUCUCGUCGGUGUGAUCACCUUUGCCUCCGUCAGCUGCCACGACGGAC ....((((((((((((((....))))((.(((....(((((((((.((((............))))))))))))).....))).)).......).))).)))))) ( -45.40) >DroPse_CAF1 9637 105 + 1 GACGGUCCGUCUGCGGUGGCGACUCUGGUGGCCCUCUGGUCACGCAGGACAACCCAAUGCUGGUGGGCGUGAUAACCUUUGCCUCCGGCAACUGUAAGAGUGGAC ....(((((((((((((((....((((((((((....)))))).)))).....))..((((((.(((((..........)))))))))))))))).))).))))) ( -41.50) >DroEre_CAF1 10746 105 + 1 GAAAGUCCGUGUGCGGAGGUGACUCCGGUGGCCCCCUGGUCACACACGACAAUGCUCGUCUCGUCGGUGUGAUCACCUUUGCUUCCGGCAGCUGCCACGACGGAC ....((((((...(((((....)))))(((((....(((((((((.((((............)))))))))))))...((((.....))))..))))).)))))) ( -49.00) >DroYak_CAF1 11269 105 + 1 GAAGGUCCGUGUGCGGAGGCGACUCCGGUGGCCCCCUGGUUACACACGACAAUGCUCGUCUCGUCGGUGUGAUCACCUUUUCUUCCGUCAGCUGCCACGACGGAC ....((((((...(((((....)))))(((((....(((((((((.((((............)))))))))))))...........(....).))))).)))))) ( -40.70) >DroAna_CAF1 24337 105 + 1 GCCACUCCGUGUGCGGAGGCGACUCCGGCGGUCCCUUGGUCACUCUGGACAACCCACGCCUGGUGGGAGUGAUCACCUUCGCCUCCGUCGGCUGCCACGGUGGUC ((((..(((((.((((...((((...(((((.....((((((((((((....))(((.....)))))))))))))...)))))...)))).))))))))))))). ( -46.40) >DroPer_CAF1 9643 105 + 1 GACGGUCCGUCUGCGGUGGCGACUCUGGUGGCCCUCUGGUCACGCAGGACAGCCCAAUGCUGGUGGGCGUGAUAACCUUUGCCUCCACCUCCUGCAAGAAUGGAC ....((((((((.(((.(....).)))((((((....))))))((((((.(((.....)))((((((.(..(......)..).)))))))))))).)).)))))) ( -43.10) >consensus GAAAGUCCGUGUGCGGAGGCGACUCCGGUGGCCCCCUGGUCACACACGACAACCCACGUCUCGUCGGUGUGAUCACCUUUGCCUCCGUCAGCUGCCACGACGGAC ....((((((((((((((....))))((.(((....(((((((((......(((.......)))..))))))))).....))).)).......)).))).))))) (-33.16 = -32.00 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:41 2006