Locus 3277

Sequence ID 3L_DroMel_CAF1
Location 9,612,599 – 9,612,708
Length 109
Max. P 0.798282
window5094

overview

Window 4

Location 9,612,599 – 9,612,708
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 90.03
Mean single sequence MFE -48.54
Consensus MFE -40.18
Energy contribution -41.63
Covariance contribution 1.45
Combinations/Pair 1.18
Mean z-score -2.22
Structure conservation index 0.83
SVM decision value 0.61
SVM RNA-class probability 0.798282
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9612599 109 + 23771897
AAGUCAUUAGCAACGGAGAAUGCGCCAGGUCAUACGGAUCGGUGGCCAGCACUGAUAUGUGCACCCGGGCCACCGAUGGCAAGUCCGUGUGCGGUGGCGACUCUGGCGG
.........((..(((((....(((((...(((((((((((((((((.((((......)))).....))))))))).......))))))))...))))).))))))).. ( -49.81)
>DroSec_CAF1 8301 109 + 1
AAGUCAUUAGCAACGGAGAAUGCGCCAGGUCAUACGGAUCGGUGGCCAGCACUGAUAUGUGCACCCGGGCCACCGAUGGCAAGUCCGUGUGCGGCGGCGACUCCGGCGG
.........((..(((((....((((....(((((((((((((((((.((((......)))).....))))))))).......))))))))....)))).))))))).. ( -50.31)
>DroSim_CAF1 8337 109 + 1
AAGUCAUUAGCAACGGAGAAUGCGCCAGGUCAUACGGAUCGGUGGCCAGCACUGAUAUGUGCACCCGGGCCACCGAUGGCAAGUCCGUGUGCGGUGGCGACUCCGGCGG
.........((..(((((....(((((...(((((((((((((((((.((((......)))).....))))))))).......))))))))...))))).))))))).. ( -52.01)
>DroEre_CAF1 8254 109 + 1
AAGUGAUUAGCAACGGAGAAUGUGCCAGGUCAUACGGAUCGGUGGCCAGCACUGAUAUGUGCACCCGGGCCACCGAUGGCAAGUCCGUGUGUGGUGGCGACUCCGGCGG
.........((..(((((....(((((...(((((((((((((((((.((((......)))).....))))))))).......))))))))...))))).))))))).. ( -51.01)
>DroYak_CAF1 8315 109 + 1
AGGUCAUUAGCAACGGAGAAUGUGCCAGGUCGUACGGAUCGGUGGCCAGCACUGACAUGUGCACCCGGGCCACCGACGGCAAGUCCGUGUGCGGUGGCGACUCCGGCGG
.........((..(((((....(((((..(((((((..(((((((((.((((......)))).....)))))))))(((.....))))))))))))))).))))))).. ( -48.90)
>DroAna_CAF1 12671 109 + 1
AGGUGAUCAGCAACAGCGAGUGUGCCAGGUCCUAUGGCAAUGUGGCCAGCACGGACAUGUGCACCCGCCAAACUGAUGGAAAGUCUGUAUGUGGCGGAGACUCCGGCGG
.........((....(.((((((((((.((((..((((......))))....)))).)).))))((((((.((.(((.....))).))...))))))..))))).)).. ( -39.20)
>consensus
AAGUCAUUAGCAACGGAGAAUGCGCCAGGUCAUACGGAUCGGUGGCCAGCACUGAUAUGUGCACCCGGGCCACCGAUGGCAAGUCCGUGUGCGGUGGCGACUCCGGCGG
.........((..(((((....(((((...(((((((((((((((((.((((......)))).....))))))))).......))))))))...))))).))))))).. (-40.18 = -41.63 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:40 2006