| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,604,674 – 9,604,767 |
| Length | 93 |
| Max. P | 0.813704 |
| Location | 9,604,674 – 9,604,767 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -12.22 |
| Consensus MFE | 0.00 |
| Energy contribution | 0.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | nan |
| Mean z-score | -1.61 |
| Structure conservation index | -0.00 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9604674 93 + 23771897 CUUAUACUAAGAUC---AAAAUUUUUUGACAUGAA--UGGCAUCAUUCAUGCAUAUCUUUUAUAACCAUAUCAUAUAACCGAUAAUCUCCCACAGCAC .(((((..((((((---(((....)))))((((((--((....))))))))....)))).)))))...((((........)))).............. ( -14.00) >DroSec_CAF1 349 95 + 1 CUUGUUAUAAGAUC---UAAAUCUUUUGACAUUAAGCUGGAAACAUGCAUGCAUAUCUCUUAUAACCAAAUCAUAUAACCUAUAAUCUUCCACAGCAC ...(((((((((..---....((....))......((((....)).)).........)))))))))................................ ( -13.20) >DroSim_CAF1 349 95 + 1 CUUGUUAUAAGAUC---UAAAUCUUUUGACAUUAAGCUGGAACCAUGCAUGCAUAUCUCUUAUAACCAAAUCAUAUAACCUAUAAUCUCCCACAGCAC ..(((((.(((((.---...))))).)))))....((((.....(((....))).....(((((.........)))))..............)))).. ( -12.30) >DroEre_CAF1 339 87 + 1 -UUGUACUGAGCUCUUUUGGAUUAU----------GUUAGCACCCUUUAUGCAUACGUCUGUUAACCACAUAAUAUAACCGAUAAUCUCCCACAGCAC -((((...(((.....((((.((((----------(((((((.......))).......(((.....)))))))))))))))....)))..))))... ( -12.40) >DroYak_CAF1 342 84 + 1 -UUGUUCUAAGUUC---UAAAUCUU----------GCUGACACGAUUAAUGCAUACGUCUGAUAACCACAUGAUAUAACCGCUAAUCUUCCACAGCAU -.............---.......(----------((((....(((((.((..((..((((.......)).))..))..)).))))).....))))). ( -9.20) >consensus CUUGUUCUAAGAUC___UAAAUCUUUUGACAU_AAGCUGGCACCAUUCAUGCAUAUCUCUUAUAACCAAAUCAUAUAACCGAUAAUCUCCCACAGCAC .................................................................................................. ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:33 2006