Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,598,119 – 9,598,211 |
Length | 92 |
Max. P | 0.585215 |
Location | 9,598,119 – 9,598,211 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 77.23 |
Mean single sequence MFE | -22.15 |
Consensus MFE | -11.77 |
Energy contribution | -15.03 |
Covariance contribution | 3.25 |
Combinations/Pair | 1.10 |
Mean z-score | -2.01 |
Structure conservation index | 0.53 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9598119 92 - 23771897 ACAACACGUGCAUUAGAUAUGCAAAACGAGCGAUAGUAGCAUCAGUAGUAUCGA-------AAGUCGAAAU-UUGUAUACUAUCGAAAAGUCUAUCGUUU ........(((((.....)))))....(((((((((.....((.((((((((((-------(........)-))).))))))).)).....))))))))) ( -23.00) >DroSec_CAF1 26662 100 - 1 ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGUAGCCUCAAUGCUAUCGGCUAUUGGUCGUCGAUAUUUUGUAUGUUAUCGAGAAGUAUAUCGUUC ........(((((.....)))))....((((((((((((((...........))))))...((.((((((..........))))))))....)))))))) ( -24.90) >DroSim_CAF1 23938 100 - 1 ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGCAUCAUCAUUGCUAUCGGUUAUUGGUCGUCGAUAUUUUGUAUGUAAUCGAAAAGUAUAUCGUAC .......((((....(((((((........((((((((.......))))))))........(((...((((.....))))...)))...))))))))))) ( -24.00) >DroYak_CAF1 23918 80 - 1 ACAACACGUGCAUUAGAUAUGCAAAAAGAGCGAUAGUACCAU--------------------CGUCGAUAUUUUGUAUAUUAUCGAUAAGUCUUUCGUUU ........(((((.....)))))....((((((.((.((...--------------------.(((((((..........)))))))..)))).)))))) ( -16.70) >consensus ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGUAGCAUCA_UGCUAUCGG_______UCGUCGAUAUUUUGUAUAUUAUCGAAAAGUAUAUCGUUC ...............(((((((........((((((((.......))))))))...........((((((..........))))))...))))))).... (-11.77 = -15.03 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:29 2006