Locus 3271

Sequence ID 3L_DroMel_CAF1
Location 9,596,355 – 9,596,464
Length 109
Max. P 0.721722
window5082

overview

Window 2

Location 9,596,355 – 9,596,464
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 69.03
Mean single sequence MFE -34.89
Consensus MFE -18.87
Energy contribution -18.74
Covariance contribution -0.14
Combinations/Pair 1.45
Mean z-score -1.47
Structure conservation index 0.54
SVM decision value 0.40
SVM RNA-class probability 0.721722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9596355 109 - 23771897
UAUUGUCGCCCUGUUCCACUGCCUUGGUAGCCUUGUCGUGGGCAGCCUUGGCUCGCUCUAGCAGCUCGAUGUCCUCCAGUUGCUGCUGUUCAGCUCUGAAAU------UAUAGAU-----
....((((..(((((.....(((..(((.((((......)))).)))..))).......)))))..))))......(((..((((.....)))).)))....------.......----- ( -32.10)
>DroVir_CAF1 18934 110 - 1
UACUGUCGCCCUGCUGUACCGCCUUGGUGGCGCGUUCGUGGGCAGCCUUGGCGCGCUCCAAGAGCUCGAUGUCAUCCUUCUUUUGUGCAUCGGCGCUGG-GU------A---GUAAAAUU
(((((..((((.((...((((((.....)))).))..))))))...((..((((((((...)))).((((((((.........)).))))))))))..)-))------)---)))..... ( -42.50)
>DroGri_CAF1 19231 111 - 1
UAUUGUCGCCCUGCUUCACCGCCUUGGUAGCCUUAUCAAGGGCAGCCUUGGCGCGUUCCAACAAUUCAAUGUCAUCCUUCUUUUGUGCAUCGGCGCUUAAGG------A---AGAAAUAU
(((((......((....((((((..(((.(((((....))))).)))..)))).))..))......))))).....(((((((.((((....))))..))))------)---))...... ( -32.60)
>DroEre_CAF1 21839 107 - 1
UAUUGUCGCCCUGUUCCACUGCCUUGGUGGCCUUGUCGUGGGCGGCCUUAGCUCGCUCCAAGAGCUCGAUGUCUUCCAGUUGCUGCUGCUCAGCUCUGUAAU------GUA--AU-----
....(((((((.....((..(((.....)))..))....)))))))...(((((.......)))))..........(((..((((.....)))).)))....------...--..----- ( -30.90)
>DroWil_CAF1 21480 115 - 1
UAUUAUCACCCUGUUUUACAGCCUUGGUGGCCUUCUCGAAGGCUGCCUUGGCCCGCUCCAAGAGCUCAAUGUCAUCUUGUUUUUGUUUUGCGGCCCUGAAACAGACAUAAUUGUU-----
..........((((((((..(((..((..(((((....)))))..))..)))((((..(((((((.............)))))))....))))...))))))))...........----- ( -39.22)
>DroAna_CAF1 23313 108 - 1
UAUUGUCUCCUUGCUCCACGGCCUCGGUGGCCUUGUCGUGAGCAGCCUUGGCUCUCGCCAGUAGCUCAAUGUCCUCCUGCUGCUGCUUGUCGGCUCUA-AAU------AAUACGG-----
((((((.............((((.....))))..((((((((((((.(((((....))))).(((.............))))))))))).))))....-.))------))))...----- ( -32.02)
>consensus
UAUUGUCGCCCUGCUCCACCGCCUUGGUGGCCUUGUCGUGGGCAGCCUUGGCUCGCUCCAAGAGCUCAAUGUCAUCCUGCUGCUGCUCAUCGGCUCUGAAAU______AAU_GAU_____
............(((.....(((..(((.((((......)))).)))..)))......(((((((.............)))))))......))).......................... (-18.87 = -18.74 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:28 2006