Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,591,902 – 9,592,022 |
Length | 120 |
Max. P | 0.638191 |
Location | 9,591,902 – 9,592,022 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.16 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -25.68 |
Energy contribution | -25.43 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.26 |
Mean z-score | -1.12 |
Structure conservation index | 0.71 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9591902 120 - 23771897 CGGGUGCUGAAUGCCCUCGAACAUGGUCUCCGAUUGCCACCACGUUGGACUUUGCGGAUCAUGCAAAUCCGUCAAGAAGGAUGGAUUAUGAUCAUUGUAUCUAUAAACAAAUUUUUUAAA ((((.((.....)).))))..((((((((.(((...(((......)))...))).))))))))..((((((((......)))))))).......((((........)))).......... ( -31.00) >DroGri_CAF1 14873 117 - 1 CGGAUGUUGUAUGCCCUCGUUCAUUGUCUCCGAUUGCCACCAGGUUGGGCUUUGUGGAUCGUGCAAAUCCGUUAGAAAUGAUGGAUUGUGAUCUUCAAAUCUGAAUGCAAUU-U--AAAC .....((((((((((((((...........)))..(((....))).))))((((.((((((....(((((((((....))))))))).)))))).)))).....))))))).-.--.... ( -32.50) >DroEre_CAF1 17364 119 - 1 CGGGUGCUGGAUGCCCUCGAACAUGGUCUCCGACUGCCACCAGGUUGGACUUUGCGGAUCGUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUUGUACCUAUAUA-AAAUAUUUUCAG .((((((.((....))..((.((..((((((((((.......)))))))(((.((((((.......)))))).))).......)))..)).))...)))))).....-............ ( -33.80) >DroYak_CAF1 17723 118 - 1 CGGGUGCUGAAUGCCCUCGAACAUGGUCUCCGACUGCCACCAGGUGGGACUUUGCGGAUCAUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUUGUACCUAUAUGCAAAUAAA--UAA .((((((..........((.....((((.(((.(((....))).)))))))...))((((((...((((((((......))))))))))))))...)))))).............--... ( -34.70) >DroMoj_CAF1 15046 114 - 1 GGGAUGCUGGAUGCCCUCUAGCAUGGUCUCCGAUUGCCACCAGGUGGGAUUCUGAGGAUCGUGCAAGUCCGUCAGGAACGAGGGAUUAUGAUCUUCAUAUCUAAGUGGCA------UCAU (((((((((((.....))))))))....)))(((.(((((......((((..(((((((((((...((((.((......)).))))))))))))))).))))..))))))------)).. ( -43.40) >DroPer_CAF1 18728 120 - 1 GGGAUGCUGUAUCCCCUCGAACAUGGUCUCCGAUUGCCACCAGGAUGGAUUCUGCGGAUCGUGCAGGUCCGUCAGAAAUGAGGGAUUGUGAUCUUCGUAUCUGCAAGGGAGAAAGAUCCA .((((.((...((((...((.((..(((((((....(((......))).(((((((((((.....)))))).))))).)).)))))..)).))...((....))..))))...)))))). ( -41.20) >consensus CGGAUGCUGAAUGCCCUCGAACAUGGUCUCCGAUUGCCACCAGGUUGGACUUUGCGGAUCGUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUCGUAUCUAUAUGCAAAUAU__UCAA .((((((..............((((((((.(((...((........))...))).))))))))..((((((((......)))))))).........)))))).................. (-25.68 = -25.43 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:27 2006