Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 948,951 – 949,064 |
Length | 113 |
Max. P | 0.552256 |
Location | 948,951 – 949,064 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -26.94 |
Consensus MFE | -21.97 |
Energy contribution | -22.55 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.82 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 948951 113 - 23771897 UACUACUCGGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA .......((((.........))))....-------.((..........(((((((((((.......)))))((((((....)))))).........))))))...........))..... ( -27.80) >DroSec_CAF1 83975 113 - 1 UACCACUCGCUUUUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGAAAUUCUACCCAAACUAAUACCCGUGCACUUA .......................((...-------.))..(((((...(((((((((((.......)))))((((((....)))))).........)))))).........))))).... ( -28.40) >DroSim_CAF1 75887 113 - 1 UACCACUCGGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA .......((((.........))))....-------.((..........(((((((((((.......)))))((((((....)))))).........))))))...........))..... ( -27.80) >DroEre_CAF1 85867 113 - 1 CACGAAUCCGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUGCCCCAACUAAUACGCCUGCACUUA ...(((..((............))..))-------)((...((......((((((((((.......)))))((((((....))))))..........))))).......))..))..... ( -27.42) >DroYak_CAF1 88068 113 - 1 UACAAUUCCGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGAGAUUCUACCCGCACUAACACCACUGCACUUA .......................((...-------......))........((((((((.......)))))((((((....)))))).........)))(((..........)))..... ( -24.10) >DroAna_CAF1 90602 108 - 1 UUCC------------AUUCGCCGCCCCCACUUUGCUUUUUGCACACUUUUGGGCGCCCAUUUGACAAGCGGCUGACAAAAGUCAGUGGCAUUCUACCCAAACUAAUACCCAUGCACUUA ....------------....(((((((......(((.....))).......)))))............((.((((((....)))))).)).......................))..... ( -26.12) >consensus UACCACUCGGUUCUACUUUCACCGCUUU_______CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA .......................((...........((...)).....(((((((((((.......)))))((((((....)))))).........))))))...........))..... (-21.97 = -22.55 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006