Locus 327

Sequence ID 3L_DroMel_CAF1
Location 948,951 – 949,064
Length 113
Max. P 0.552256
window491

overview

Window 1

Location 948,951 – 949,064
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.13
Mean single sequence MFE -26.94
Consensus MFE -21.97
Energy contribution -22.55
Covariance contribution 0.58
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.552256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 948951 113 - 23771897
UACUACUCGGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA
.......((((.........))))....-------.((..........(((((((((((.......)))))((((((....)))))).........))))))...........))..... ( -27.80)
>DroSec_CAF1 83975 113 - 1
UACCACUCGCUUUUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGAAAUUCUACCCAAACUAAUACCCGUGCACUUA
.......................((...-------.))..(((((...(((((((((((.......)))))((((((....)))))).........)))))).........))))).... ( -28.40)
>DroSim_CAF1 75887 113 - 1
UACCACUCGGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA
.......((((.........))))....-------.((..........(((((((((((.......)))))((((((....)))))).........))))))...........))..... ( -27.80)
>DroEre_CAF1 85867 113 - 1
CACGAAUCCGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUGCCCCAACUAAUACGCCUGCACUUA
...(((..((............))..))-------)((...((......((((((((((.......)))))((((((....))))))..........))))).......))..))..... ( -27.42)
>DroYak_CAF1 88068 113 - 1
UACAAUUCCGUUCUACUUUCACCGCUUU-------CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGAGAUUCUACCCGCACUAACACCACUGCACUUA
.......................((...-------......))........((((((((.......)))))((((((....)))))).........)))(((..........)))..... ( -24.10)
>DroAna_CAF1 90602 108 - 1
UUCC------------AUUCGCCGCCCCCACUUUGCUUUUUGCACACUUUUGGGCGCCCAUUUGACAAGCGGCUGACAAAAGUCAGUGGCAUUCUACCCAAACUAAUACCCAUGCACUUA
....------------....(((((((......(((.....))).......)))))............((.((((((....)))))).)).......................))..... ( -26.12)
>consensus
UACCACUCGGUUCUACUUUCACCGCUUU_______CGCUUUGCACACUUUUGGGCGCCCAUUUGACGGGCGGCUGACAAAAGUCAGUGACAUUCUACCCAAACUAAUACCCCUGCACUUA
.......................((...........((...)).....(((((((((((.......)))))((((((....)))))).........))))))...........))..... (-21.97 = -22.55 +   0.58) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006