Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,587,019 – 9,587,111 |
Length | 92 |
Max. P | 0.595628 |
Location | 9,587,019 – 9,587,111 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -39.27 |
Consensus MFE | -28.11 |
Energy contribution | -26.85 |
Covariance contribution | -1.26 |
Combinations/Pair | 1.47 |
Mean z-score | -1.52 |
Structure conservation index | 0.72 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9587019 92 - 23771897 CUGGGAGUGGGUGAUGGCAGACUCCUAUCCUGCUCCUCAGUGCCGGAUGGCUCGUUGUUUAGGUACUCUGCGGCGUGAGUUGCCGGUACAUC .((((((..((....((......))...))..)))).))(((((((.(((((((((((..((...))..)))))..)))))))))))))... ( -36.00) >DroSec_CAF1 15830 90 - 1 CUGGGCGUGGGUGAGGGCAGACUCCUAUACUGCUCCUCAGUACCAGAUGGCUCGUUGUUCAGGUACUCUGCG-CUGGAG-UGCCGGCACAUC ..((((.(((.(((((((((.........)))).)))))...)))....))))..(((.(.((((((((...-..))))-)))).).))).. ( -33.30) >DroSim_CAF1 12880 92 - 1 CUGGGAGUGGGUGAGGGCAGACUUCUAUCCUGCUCCUCAGUACCGGAUGGCUCGUUGUUCAGGUACUCUGCGGCUGGAGUUGCCGGCACAUC ..(((((..((.((((.....))))...))..))))).(((((((((..(....)..))).)))))).....(((((.....)))))..... ( -36.40) >DroEre_CAF1 12516 92 - 1 CUGGGAGUGGGUGAGGGCAGACUCCUGUCCUGCUCCUCAGUGCCGGACAGCUCGCUGUUCAGGUGCUCCGCGACGUGAGUUGCUGGCACAUC ....(((.((((.(((((((....)))))))))))))).(((((((.((((((((.(((..((....))..))))))))))))))))))... ( -47.40) >DroYak_CAF1 12816 92 - 1 CUGGGAGUGGGUGAGGGCAGACUUCGUUCCUGCUCCUCAGUGCCGGACAGCUCGCUGUUUAGGUGCUCUGCGGCGGGAGCUGCUGGCACAUC .((((((..(((((((.....)))))..))..)))).))(((((((.(((((((((((..((...))..)))))..)))))))))))))... ( -47.00) >DroAna_CAF1 12544 92 - 1 CUGGGAGUGGGAGAAGGCAGGCUGCGCUCCGUUUCCUCUACGCCGGAUAGUUCGCUGUUCAGGUGCUCCGGAGCUGGGGUGGUAGCCACAGC (((...((........)).((((((((((((.((((....((((((((((....)))))).))))....)))).)))))).)))))).))). ( -35.50) >consensus CUGGGAGUGGGUGAGGGCAGACUCCUAUCCUGCUCCUCAGUGCCGGAUAGCUCGCUGUUCAGGUACUCUGCGGCGGGAGUUGCCGGCACAUC ......((((((((((((((.........)))).)))))(((((((((((....)))))).))))).))(((((....)))))...)))... (-28.11 = -26.85 + -1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:26 2006