Locus 3268

Sequence ID 3L_DroMel_CAF1
Location 9,579,251 – 9,579,366
Length 115
Max. P 0.784127
window5079

overview

Window 9

Location 9,579,251 – 9,579,366
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.93
Mean single sequence MFE -35.05
Consensus MFE -31.10
Energy contribution -30.93
Covariance contribution -0.17
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.89
SVM decision value 0.57
SVM RNA-class probability 0.784127
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9579251 115 - 23771897
AAUUUUAAACCUCGCCCACAAGUCUCUGGUGCUGCGUGACAUGGCGAAGCGCUCCUGGAGCGCGCCCUCGUGGCGUGCCACAUAUGUUUUGGCCUGUCAACA-CAUAC----AAGGAGCC
...........((((((((.(((.......)))..)))....)))))...(((((((..(((((((.....)))))))..).(((((.((((....)))).)-)))).----.)))))). ( -39.90)
>DroVir_CAF1 803 116 - 1
AAUUUUAAACCUCGCCCACAAAUCUCUCGUGCUGCGUGACAUGGCAAAGCGCUCCUGCAGCGCGCCCUCGUGGCGUGCCACAUACGUUUUCGCCUGUCAACAUCAUUA----AAAAUGCC
..((((((....(((.(((.........)))..)))(((((.((((((((((....)).(((((((.....))))))).......))))).))))))))......)))----)))..... ( -34.50)
>DroGri_CAF1 1146 116 - 1
AAUUUUAAACCUCGCCCACAAAUCUCUCGUGCUGCGUGACAUGGCGAAUCGCUCCUGCAGCGCUCCCUCGUGGCGUGCCACAUACGUUUUCGCCUGUCAACAUCAUUA----AAAAUGCC
..((((((....(((.(((.........)))..)))(((((.((((((.((((.....)))).......((((....)))).......)))))))))))......)))----)))..... ( -30.20)
>DroWil_CAF1 2012 119 - 1
AAUUUUAAACCUCGCCCACAAAUCCCUGGUGCUGCGUGACAUGGCAAAGCGCUCCUGGAGCGCGCCCUCGUGGCGUGCCACAUAUGUUUUGGCCUGUCAACA-CACACACACAUGGUGCC
.............(((((((......))(((.((.((((((.(((((((((....((..(((((((.....)))))))..))..)))))).))))))).)).-))))).....))).)). ( -37.80)
>DroMoj_CAF1 1194 116 - 1
AAUUUUAAACCUCGCCCACAAAUCUCUCGUGCUGCGUGACAUGGCAAAGCGCUCCUGCAGCGCGCCCUCGUGGCGUGCCACAUACGUUUUUGCCUGUCAACAUCAUUA----AAAAUGCC
..((((((....(((.(((.........)))..)))(((((.((((((((((....)).(((((((.....))))))).......).))))))))))))......)))----)))..... ( -34.50)
>DroAna_CAF1 4717 114 - 1
AAUUUUAAACCUCGCCCACAAGUCCCUCGUGCUGCGUGACAUGGCGAAGCGCUCCUGGAGCGCGCCCUCGUGGCGUGCCACAUAUGUUUUGGCCUGUCAACA-GAUCC----GC-AAGUC
.............((.(((.((...)).)))(((..(((((.(((((((((....((..(((((((.....)))))))..))..)))))).)))))))).))-)....----))-..... ( -33.40)
>consensus
AAUUUUAAACCUCGCCCACAAAUCUCUCGUGCUGCGUGACAUGGCAAAGCGCUCCUGCAGCGCGCCCUCGUGGCGUGCCACAUACGUUUUGGCCUGUCAACA_CAUUA____AAAAUGCC
............(((.(((.........)))..)))(((((.(((((((((....((..(((((((.....)))))))..))..)))))).))))))))..................... (-31.10 = -30.93 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:25 2006