Locus 3267

Sequence ID 3L_DroMel_CAF1
Location 9,579,053 – 9,579,145
Length 92
Max. P 0.618780
window5078

overview

Window 8

Location 9,579,053 – 9,579,145
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -24.30
Consensus MFE -19.94
Energy contribution -19.97
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.82
SVM decision value 0.17
SVM RNA-class probability 0.618780
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9579053 92 + 23771897
GCCC-----AAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCGCCUAUCCUUCCUU----CCUU---GCAAACCUCACC
((((-----(.....)))))(((.(((((((((((((........)).)).))))).....)))).)))............----....---............ ( -23.10)
>DroSec_CAF1 4487 96 + 1
GCCC-----AAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCGCCUAUCCUUCCUUCCAUCCUU---GCAAACCUCCCC
((((-----(.....)))))(((.(((((((((((((........)).)).))))).....)))).)))....................---............ ( -23.10)
>DroSim_CAF1 4519 92 + 1
GCCC-----AAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCGCCUAUCCUUCCUU----CCUU---GCAAACCUCCCC
((((-----(.....)))))(((.(((((((((((((........)).)).))))).....)))).)))............----....---............ ( -23.10)
>DroEre_CAF1 4475 92 + 1
UGCC-----CAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCGCCUUUACCUCCUU----GCAA---ACCAACCACCCC
.(((-----((....)))))(((.(((((((((((((........)).)).))))).....)))).)))............----....---............ ( -23.10)
>DroYak_CAF1 4712 95 + 1
CGCC-----CAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGAGCGCUUUUUCUUCCUU----GCCAGGACCAAACCACCCC
.(((-----((....)))))(((((((((((((((((........)).)).))))).....)))))))).......((((.----...))))............ ( -30.50)
>DroAna_CAF1 4493 96 + 1
UCCCAAAAAAAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCUCCUUACCCGCGUC-----CCG---ACUUUCCCAGCC
..............(((((.((((........))))(((..((.(((((((..........)))))))....))..)))..-----...---.....))))).. ( -22.90)
>consensus
GCCC_____AAAAACUGGGCGCGUUCGUUUUCACGCCGCUUGUCAGGUCGUUGAAAAUGUUACGACCGCCUAUCCUUCCUU____CCUU___GCAAACCUCCCC
................((((((((.((((((((((((........)).)).))))))))..)))..)))))................................. (-19.94 = -19.97 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:24 2006