| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,574,548 – 9,574,668 |
| Length | 120 |
| Max. P | 0.778262 |
| Location | 9,574,548 – 9,574,668 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -47.15 |
| Consensus MFE | -26.41 |
| Energy contribution | -27.17 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9574548 120 + 23771897 GCAAAUCCAGCGGGCAAUCCCAAGGUGCACCCGUUGGAGGCCACAAAUGCGGAAAUGCCCACCACGGUGGAAUCCUGUUUGGUGAUCAGGGGGCUGCCGGCAUCGCCAAAGCAAGUGGAU ....(((((((.((((..(((..(((.((((....(((..((((....(.((......)).)....))))..))).....)))))))..)))..)))).))...((....))...))))) ( -47.30) >DroSec_CAF1 56 120 + 1 GCAAAUCCAGCGGGCAAUCCCAAGGUGCACCCGUUGGAGGCUACGAAAGCGGAAAUGCCUACCACGGUGGAAUCCUGUUUGGUGAUCAGGGGGCUGCCGGCAUCGCCAAAGCAAGUGGAU (((..(((((((((..(((....)))...)))))))))..(..(....)..)...)))...((((((..(..(((((.........)))))..)..))(((...))).......)))).. ( -45.50) >DroEre_CAF1 56 120 + 1 GCAAAUCCAGCGGGCAGUCCCAAGGUGCAACCGUUGGAGGCCACAAAGGUGGAAACGCCCACCACGAUGGAAUCUUGUUUGGUGAUCAGGGGACUGCCGGCAUCGCCGUAGCAAGUGGAU ....(((((((.(((((((((..(((...((((..(((..(((....(((((......)))))....)))..)))....)))).)))..))))))))).))...((....))...))))) ( -52.10) >DroYak_CAF1 241 120 + 1 GCAAAUCCAGCGGGCAAUCCCAAGGUGCACCCGUUGGAGGCCACAAAGGCGGAAAUGCCCACCACGGUGGAAUCUUGCUUGGUGAUCAGGGGACUGCCGGCAUCGCCAUAGCAAGUGGAU (((..(((((((((..(((....)))...))))))))).(((.....))).....)))((((....))))...((((((((((((((((....))).....))))))).))))))..... ( -50.50) >DroAna_CAF1 56 120 + 1 GCGUAUCCUGCCGGUAUGCCCAAUGUGCAACCGUUGGCGGCGAUAAACUCGGAUAUGCCCACCACAAGGGAGCCCUGUUGAGUAACCAAAGGACUGCCAGCGUCUCCGAAACAGGGGGAG ((((((((.((((......((((((......))))))))))((.....)))))))))).........((.((.(((.(((......)))))).)).))....(((((......))))).. ( -37.40) >DroPer_CAF1 56 120 + 1 GAGAACCCUGCUGGCAGUCCCAGGGUACAGCCCUGCGUGGACACAAACAGCGACAGCCCCACCAUAGUGGAUCCCUGUGCUAUGACCAACGGACUGCCAGCGUCGCCAAAGCAGAUGGAC ......((.((((((((((((((((.....)))))(((((.((((....((....)).((((....)))).....)))))))))......)))))))))))(((((....)).))))).. ( -50.10) >consensus GCAAAUCCAGCGGGCAAUCCCAAGGUGCACCCGUUGGAGGCCACAAACGCGGAAAUGCCCACCACGGUGGAAUCCUGUUUGGUGAUCAGGGGACUGCCGGCAUCGCCAAAGCAAGUGGAU .....((((((.((((.((((..(((....(((((...(....)...))))).......(((((.((..(....)..))))))))))..)))).)))).))...((....))...)))). (-26.41 = -27.17 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:23 2006