Locus 3265

Sequence ID 3L_DroMel_CAF1
Location 9,568,778 – 9,568,869
Length 91
Max. P 0.575940
window5076

overview

Window 6

Location 9,568,778 – 9,568,869
Length 91
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -24.38
Consensus MFE -14.30
Energy contribution -15.58
Covariance contribution 1.28
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.59
SVM decision value 0.08
SVM RNA-class probability 0.575940
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9568778 91 - 23771897
AAGCGUGGUGGGGCAAAUACGUUAAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGCCCACCAGCG-AAAUCCGUA----------
..((.(((((((((((..((......))..(((..(((((((((....))))))).))..)))...))))..))))))))).-.........---------- ( -27.80)
>DroGri_CAF1 3515 85 - 1
---------CGAGAAUAAACAA-AAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGUCCACCAAGG----GCCAG-GGAAUGCA--
---------.............-.......(((..(((((((((....))))))).))..)))...((.((((((.....))----).)))-.)).....-- ( -16.00)
>DroSec_CAF1 3544 91 - 1
AAGCGUGGUGGGGCAAAUACGUUAAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGCCCACCAGCG-AAAUCCGUA----------
..((.(((((((((((..((......))..(((..(((((((((....))))))).))..)))...))))..))))))))).-.........---------- ( -27.80)
>DroEre_CAF1 3457 90 - 1
AAGCGUGGUGGGGCAAAUACGU-AAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGCCCACCAGCG-AAAUCCGUA----------
..((.(((((((.((..(((((-((..(((...((((......))))..))).))))))).((.....))))))))))))).-.........---------- ( -28.20)
>DroAna_CAF1 3685 95 - 1
-----A-GGGGGGGAAAUAAGU-AAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGCCCACCAGCACAAAUCCACGCGCCACAAGU
-----.-(((.((((.......-.......(((..(((((((((....))))))).))..)))....(((((.....)))))....))).).).))...... ( -22.10)
>consensus
AAGCGUGGUGGGGCAAAUACGU_AAAGUCAGUGUGUAAAUUUAUGCAAAUGAGUUAUGUGCGCAAAUUGCUGCCCACCAGCG_AAAUCCGUA__________
.....(((((((..................(..(((((.(((((....))))))))))..)((.....))..)))))))....................... (-14.30 = -15.58 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:22 2006