Locus 3259

Sequence ID 3L_DroMel_CAF1
Location 9,536,198 – 9,536,292
Length 94
Max. P 0.882226
window5065

overview

Window 5

Location 9,536,198 – 9,536,292
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 82.47
Mean single sequence MFE -34.50
Consensus MFE -24.96
Energy contribution -26.32
Covariance contribution 1.36
Combinations/Pair 1.29
Mean z-score -2.07
Structure conservation index 0.72
SVM decision value 0.92
SVM RNA-class probability 0.882226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9536198 94 + 23771897
UUGCUGGGUUGUUGGGUAGCUGGGUUGCUGGCUAUCUGGCAGCCGGGAUCUUGGCCAGCUCUUUUUUGUGCCCAACUUGGCCAGCAGACGAGUG
(((((((.(.((((((((...(((..(((((((((((((...)))))....)))))))).))).....))))))))..).)))))))....... ( -41.00)
>DroSec_CAF1 45227 89 + 1
-----GGGUAGCUGGGUAGCUGGGUUGCUGGCUAUCUGGCAGCUGGGAUCUUGGCCAGCUCUUUUUUGUGCCCAACUUGGCCAACAGACGAGUG
-----(((((((..((((((..(....)..))))))..))((((((........))))))........))))).(((((.........))))). ( -39.10)
>DroSim_CAF1 47333 81 + 1
-----GGGUA--------GCUGGGUUGCUGGCUAUCUGGCAGCUGGGAUCUUGGCCAGCUCUUUUUUGUACCCAACUUGGCCAACAGACGAGUG
-----(((((--------((..(((.(....).)))..))((((((........))))))........))))).(((((.........))))). ( -28.00)
>DroEre_CAF1 45397 86 + 1
-----GGGUAUCUGGGUAUCUGGGUAUUUGGGUAUCUGGAAGCUGGAAUCUUGGCCAGCUCUUUUUGGUGCCC---UCGGCCAACAGUCGAGUG
-----(((((((..((((((..(....)..))))))..))((((((........))))))........)))))---(((((.....)))))... ( -32.40)
>DroYak_CAF1 48495 86 + 1
-----GGGCAACUGGGUAUCGGGGUAUCUGGUUAUCUGGCAGCUGGGAUCUUGGCCAGCUCUUUUUUGCGCCC---UCGGCCAACAGUCGAGUG
-----(((((((..(((((....)))))..)))....((.((((((........)))))))).......))))---(((((.....)))))... ( -32.00)
>consensus
_____GGGUAGCUGGGUAGCUGGGUUGCUGGCUAUCUGGCAGCUGGGAUCUUGGCCAGCUCUUUUUUGUGCCCAACUUGGCCAACAGACGAGUG
.....((((.((..((((((..(....)..))))))..))((((((........)))))).........)))).(((((.........))))). (-24.96 = -26.32 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006