Locus 3258

Sequence ID	3L_DroMel_CAF1
Location	9,534,081 – 9,534,174
Length	93
Max. P	0.950358

overview

Window 4

Location	9,534,081 – 9,534,174
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	94.55
Mean single sequence MFE	-18.46
Consensus MFE	-14.92
Energy contribution	-15.28
Covariance contribution	0.36
Combinations/Pair	1.04
Mean z-score	-2.14
Structure conservation index	0.81
SVM decision value	1.40
SVM RNA-class probability	0.950358
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9534081 93 + 23771897
UCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGAAAACUGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUGAACAAAAAUCGA
(((.......(((((((.(((((....))))))))))))..(((((((((((((.....)))))))......)))))).)))........... ( -20.40)
>DroSec_CAF1 43171 91 + 1
UCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGA--ACAGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUGAACAAAAAUCGA
(((........((((((.(((((....))))))))))--)..((((((((((((.....)))))))......)))))..)))........... ( -18.50)
>DroSim_CAF1 45290 91 + 1
UCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGA--ACAGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUGAACAAAUAUCGA
(((........((((((.(((((....))))))))))--)..((((((((((((.....)))))))......)))))..)))........... ( -18.50)
>DroEre_CAF1 43318 90 + 1
U-AAAAUACAUAUCUGUUCAGAUAAUUGUUUCGAGGA--AUUGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUGAACAAAAAUCGA
.-........(((((....))))).((((((......--(((((((((((((((.....)))))))......))))))))))))))....... ( -17.20)
>DroYak_CAF1 46343 90 + 1
U-AAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCGGA--ACUGCCUUUGUGUUUAUUUAAAACAUAUUCAAAAGGGCAAUGAACAAAAAUCGA
.-......(((((((((.(((((....))))))))))--).(((((((((((((.....)))))))......)))))))))............ ( -17.70)
>consensus
UCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGA__ACUGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUGAACAAAAAUCGA
........(((((((((.(((((....)))))))))).....((((((((((((.....)))))))......)))))))))............ (-14.92 = -15.28 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006